Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00708 ATGGAGAGAGGGTGGAAGGCAAATAGTGTTGAGATTTCACCAAATTGTCCCAGGTGTGGTTCTTCCAATACCAAGTTCTGCTACTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGCAAAAGTAGAAGGGGTAAATATAATAAGGCCTTAAGACAAGCCAATAGCCCAGTTAGGCATTCTGACGATTTAAGGCCCTCATCTTCAGTGGTGTCTGATGGACCAAATATTGATCTTGCACAAGTCTATGCAAGTTTTCTCAATGTGAAGCCAGATCAAGTGCAAACAGTGCGCTCTCCTTCTCCTGAGTATTCAACCATAATTAACACTGATTTTGGCCACAGTGCTTTCTCTGAAAAGCATGGTCTTACTGGGCCATTTCCTTTTCATGAACAGCCCACAGAATCCCATTTTGATGAGGATATGGAACTGTACTTTTGCGGGTTGAACTCTATCCAGAAGCATCAAGAATATAGTAGCAGTCGTGATACAACAGTTACAAAAACAAATTTTGAGTTGCCTCCATTACCAAGTGAAGATGCAGAAGCCTCACATGGTAATGTGTTGTGGTCCAATTCTGAGATGATGATAGATCATGCTTTGCAAGCCACTCAATCGCCCCTTTTTGGACCTGAATCTTATGATGCAGACTTCTTGATGGGTAACTGTTGGAGCCACTTCGATTTGCCTAGGGATGCCTCTTTTTCCATGCCTTGA 789 0.4385 MERGWKANSVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRQANSPVRHSDDLRPSSSVVSDGPNIDLAQVYASFLNVKPDQVQTVRSPSPEYSTIINTDFGHSAFSEKHGLTGPFPFHEQPTESHFDEDMELYFCGLNSIQKHQEYSSSRDTTVTKTNFELPPLPSEDAEASHGNVLWSNSEMMIDHALQATQSPLFGPESYDADFLMGNCWSHFDLPRDASFSMP* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00708 262 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 172 IPR045174 GO:0003700|GO:0006355
Lapu6g00708 262 MobiDBLite consensus disorder prediction 182 207 - -
Lapu6g00708 262 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Lapu6g00708 262 MobiDBLite consensus disorder prediction 182 196 - -
Lapu6g00708 262 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Lapu6g00708 262 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00708 Lapu-Chr6 7455732 7456520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00708 5 257 C2C2-Dof Transcription Factor Family AT3G52440 40.449 1.34e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu6g00708 zf-Dof 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00708 - - gmx:778109 396.741