Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01576 ATGGATATAGATCTCCGGTTACCTTCTGGTGAACATGATAAGGAGGATGCAGAAACAACTACAATTGATAACATGTTGGACAGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGATGCTGGTATCGAGGTTCATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTTTACCAAGAGTATGCTCGATCAATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGCTCCAGATATGGAACGAAACGAGAGTATGACAAATCATTTAATCGACCACGGGCTCGACAGAACAAACAAGATTCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAATGGGTTATACATAGCTTTGTGAAAGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTCAGGAGAGGCTAAACTCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCAAGACTATATCAACTTTTGTGATGTTGTGTCATTTGATACCACGTATGTTAGAAACAAATATAAAATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTACACTACTTGGATGTGCCTTGATATCAGATGAAAGTGCAGCCACTTTTTCTTGGCTATTTCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCGAAAGTGATCATCACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACATCTTTCCTAATTCTAGCCATTGTGTTTGCTTATGGCATGTATTAGGGAAGGTATCTGAAAATTTAGCTCCTGTAATTAAAAAGCATGAGAATTTTATGGCAAAATTTGAAAAATGCATATATAGGTCCTTGACCAGTGATGATTTTGAGAAGAGATGGTGGAAAATTGTTGACAAGTGTGAACTTCGACAGGATGAATGCTTGCAGTCATTGTATGAAGATCGTAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACTTCCCAGCGATCTGAAAGTGTAAATTCCTTTTTTGACAAATATGTTCATAAGAAGACCTCTGTCCAAGATTTTGTCAAACAGTATGAATCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCTGATTCTGATACTTGGAATAAATTGGCAACCTTAAAAACTCCTTCACCTCTGGAGAAGAGTGTTGCAGGGATTTTCACACATGCCGTATTCAAGAAAATTCAAGCTGAGGTTGTAGGTGCAGTTGCCTGTCATCCCAAAGCTGACAGGCAGGATGATACAACCACTGTTCACAGGGTTCATGACATGGAAACAAATAAAGATTTCTTTGTTGTGGTGAATCAAGTAAAGTTCGAGTTGTCTTGTATCTGTCGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGACAGTCAGTGTTCCCCTCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAACTCAGGAATATAATTGGTGAAGAATCTGAACACATGCTGACTAGGGTGCAACGGTACAATGATTTATGTCAGCGAGCACTAAAGCTTAGTGAAGAAGGATCATTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCGCTACATGAAGCACACAAAAGTTGCGTGAGTGTTAACAATTCTAGTAAGAGTCCTACAGAAGCTGGTACATCGGGGGCTCATGGTCAGCTTTCCACCGAAGAAGATACACAAAGTAGAAATATGGGCAAGCCAAACAAAAAGAAGAATCCGACTAAAAAGAAAAAGGTGAACTCAGAAGCAGAAGTGATGACAGTTGGGGCACTAGACAACTTGCAACAAATGGAAAAATTCAGCACAAGAGCTGCAGTAAATCTTGAAGGTTATTATGGCACACAGCAGAGCGTTCAGGGAATGTTGAACTTAATGGGACCAACTCGTGATGATTACTATGGGAATCAACAGACTCTCCAGGGGCTGGGACCAATAAGTTCGATACCAACCAGTCACGATGGTTATTATGGTGCACATCAGGGCATTCCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGTTTCACATATAGCATTCGGGATGATCCTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCAAGACATGCATGA 2532 0.393 MDIDLRLPSGEHDKEDAETTTIDNMLDSEEKLHNGGIDGRNIVDAGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRQDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHVLGKVSENLAPVIKKHENFMAKFEKCIYRSLTSDDFEKRWWKIVDKCELRQDECLQSLYEDRKLWAPTFMKDVFLGGMSTSQRSESVNSFFDKYVHKKTSVQDFVKQYESILQDRYEEEAKADSDTWNKLATLKTPSPLEKSVAGIFTHAVFKKIQAEVVGAVACHPKADRQDDTTTVHRVHDMETNKDFFVVVNQVKFELSCICRLFEYRGYLCRHALIVLQYSGQSVFPSQYILKRWTKDAKLRNIIGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYSIAFHALHEAHKSCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNMGKPNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSTRAAVNLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQGIPGLAQLDFLRTGFTYSIRDDPNVRATQLHEDPSRHA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01576 843 MobiDBLite consensus disorder prediction 678 706 - -
Lapu5g01576 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 677 IPR031052 GO:0006355
Lapu5g01576 843 MobiDBLite consensus disorder prediction 132 164 - -
Lapu5g01576 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Lapu5g01576 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Lapu5g01576 843 SMART 26again6 579 606 IPR006564 GO:0008270
Lapu5g01576 843 Pfam MULE transposase domain 288 380 IPR018289 -
Lapu5g01576 843 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
Lapu5g01576 843 MobiDBLite consensus disorder prediction 678 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01576 Lapu-Chr5 28951223 28959629 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu5g01576 FAR1 2.3e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01576 5 28951223 28959629 Lapu5g00329 5 2731244 2735854 PCT