Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01495 ATGAAAGATTTAACTGTTCGTGCCGAAGATTCTTTTTCTTGTCTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGGTAGCTTTAGATAGTGATGTTTCTCTATTAAATGAAGTTGGCCTCTGGTATGTACGCCAGATTGGATCCAAACAAATTGTTCTGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTATGGATGTTCTAAAACTTATACTCTCATGCCCGGAGGCTGATGTCAATTTCTCCTGTGGGACAGATAAAAGCACTGCCCTTCATTGTGCTGCATCAGGTGGTTCTGTTAATGCAGTTGATGTTGTAAAATTGCTATTATCAGCTGGTGCTGACATCAGATGTGTGGATGCTCATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTTGAAGGTTTGAAAGCAACTCTTGAAGATCTACTTTCAGATAGTGCGTGTGACGGGTCTATTGGTGACTGTTTTATTCCGGTATCAGTTAATTCATCATGTTCTGATTCAGGGGCTCATTTTTTATTACCTGAGAATGGGTTGCCATCTTCTCCTATGGCGTCCAAGTTCACTGATACAGCTGTTAATTCTGCCTCTGAGAAGAAAGAATATCCAATTGACCCGTCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATATTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGAAGGAGAGACCCCAGAAAGTTCCATTACAGTTGCGTGCCATGCCCTGAGTTTAGAAAGGGGGCCTGTAGACGCGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGACGGTCTTAGTTGTAATAGAAGGGTATGTTTTTTCGCCCACACAGCAGAAGAGCTGCGCCCATTGTACGTGTCCACTGGATCCGCTGTTCCTTCACCCCGTTCATCTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCGTCCTCACTATCTGCCATGTCTCCATCTCCCTTTGCTCAGCCAATGTCTCCGTCTACCAATGGTATTTCTCACTCATCTACTGCTTGGCCACAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGATTAAGATCTTCTCTTAATGCTCGCGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACACCTTCTGAATGACCTGAGCTGTTTCTCTCAGTCCCGTCCTGGTGTCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCGTCCCCTAGGTATTCTGACCCAGCAGCTGCTTATGTATTTTCCCCAACACACAAGTCAGCTGTTTTGAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAACACAAGTGTCTCATCTCCTAGGAATGTTGAACATCCTCTTTTTCAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTTTGGAACCAATCTCTCCAATGAGCGCTCGGTTGTCAGCATTCGCCCAGCGTGACAAACAGCAGCAGCAACAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCTATTGTTGGGTCCCCGGCTAACTCCTGGTCCAATTGGGGTTCTCCTCATGGGAATGGGAAAGTAGATTGGTCGGTAAATGGGAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAATAATGGGGAGGAGCCTGATCTATCCTGGGTTCAATCCCTTGTGAAGGAATCTCCATCCGATATTAAAGAGAAATTGGCAGGTTCTGGCCCCACAGTATCTGCAGATGGGCAGAATTCCAATCCTCAGGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAACTGGATCAGCTTGATATGGGACAGTTGCAGGTTGACGTGAAGATCGCATTGATTATTGTGTTGATGGGGACCAAGGAACAGAGTAAAATGCAGGACCATGTACTGTAA 2187 0.449 MKDLTVRAEDSFSCLLELASNNDFEDFKVALDSDVSLLNEVGLWYVRQIGSKQIVLEHRTPLMVASMYGSMDVLKLILSCPEADVNFSCGTDKSTALHCAASGGSVNAVDVVKLLLSAGADIRCVDAHGNRPVDVIVVPPKLEGLKATLEDLLSDSACDGSIGDCFIPVSVNSSCSDSGAHFLLPENGLPSSPMASKFTDTAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGLSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQPMSPSTNGISHSSTAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQSRPGVISVSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAAYVFSPTHKSAVLNQFQQLQSSLSPINTSVSSPRNVEHPLFQASFGVSSPGRMSPRSLEPISPMSARLSAFAQRDKQQQQQQLRSLSSRDLGAHNPVSIVGSPANSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSDIKEKLAGSGPTVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLDMGQLQVDVKIALIIVLMGTKEQSKMQDHVL* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01495 728 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Lapu5g01495 728 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Lapu5g01495 728 Pfam Ankyrin repeats (3 copies) 50 124 IPR002110 GO:0005515
Lapu5g01495 728 MobiDBLite consensus disorder prediction 564 585 - -
Lapu5g01495 728 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Lapu5g01495 728 SUPERFAMILY Ankyrin repeat 8 137 IPR036770 -
Lapu5g01495 728 PANTHER UNKEMPT FAMILY MEMBER 17 651 IPR045234 -
Lapu5g01495 728 MobiDBLite consensus disorder prediction 374 394 - -
Lapu5g01495 728 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lapu5g01495 728 MobiDBLite consensus disorder prediction 563 604 - -
Lapu5g01495 728 MobiDBLite consensus disorder prediction 654 677 - -
Lapu5g01495 728 Gene3D - 271 333 - -
Lapu5g01495 728 Gene3D - 2 151 IPR036770 -
Lapu5g01495 728 Pfam CCCH-type zinc finger 275 295 IPR041367 -
Lapu5g01495 728 Coils Coil 562 582 - -
Lapu5g01495 728 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lapu5g01495 728 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lapu5g01495 728 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lapu5g01495 728 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01495 Lapu-Chr5 28213430 28219146 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu5g01495 Ank_2 1.1e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01495 5 28213430 28219146 Lapu5g01495 5 28213430 28219146 ECH