Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01494 ATGGAGTCAGAAGCAGAAGCTGGGGCAAAGCCACTGAATGCATTGGGTGGCCAAGTCTGCCAGATCTGTGGTGACAATATTGGGAACAATGTGGATGGCAATCCGTTCATTGCTTGCGATGTCTGTGCTTTCCCCGTCTGCAGGCCGTGCTATGAATATGAAAGGAAGGATGGAAATCAGTCTTGCCCTCAGTGCAAGACTAGGTACAAGAGGCACAAAGGTAGTCCTGCTATTCTTGGAGACAGGGAAGAGGATGGGGGTGCTGATGATGGTGCAAGTGACTTCAATTACAATTCGGAAAATCAGAACCAGAAACAGAAAATTGCAGAGCGCATGTTGGGCTGGCAAATGGCATACGGTCGAGCAGAGGAGGTTGGTGCTCCAAATTATGATAAGGAAGTTTCGCATAATCACATTCCTATGCTCTCCAGTGGACAGGAGGTTTCTGGAGAATTATCTGCGGCCTCACCTGAGAGGTCATCGATGGCATCTCCTGGTGGCCGTGGGAAGCGTGTCCATAATCTTCAATATTCATCTGACATTAATCAATCACCAAATATTAGAGTTGGGGATCCTGGATTGGGCAATGTGGCATGGAAAGAAAGAGTTGATGGCTGGAAAATGAAGCAAGATAAGAATGTTGCTCCAATGAGCACAGGCCAAGCTACATCTGAAAGAGGAGCTGGAGATATTGATGCTAGTACTGATGTGCTTGTGGATGATTCCTTGTTGAATGATGAGGCTCGGCAACCTCTCTCCCGGAAGGTTTCTATCCCATCATCTAGGATCAATCCATACCGTATGGTCATTGCACTGCGGCTGGTTATCCTATGCATTTTTCTGCATTACCGAATAACAAATCCTGTGCCCAATGCATATGCATTGTGGTTGATATCAGTTATATGTGAGATTTGGTTTGCTATATCTTGGATATTGGATCAATTTCCTAAATGGCTCCCTGTGAACCGTGAAACATATCTTGACAGACTTGCACTAAGATATGATCGAGAAGGGGAACCATCGCAGCTAGCAGCTGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAAGAGCCTCCACTTGTGACTGCTAACACTGTACTATCTATTCTTGCTGTTGATTACCCAGTGGATAAGGTGTCGTGTTATGTCTCTGATGATGGTGCTGCTATGTTGACATTCGAAGCACTGGCCGAGACATCAGAGTTTGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATAACATTGAACCCCGGGCACCTGAGTGGTATTTTGCACTGAAGATTGACTATTTGAAAGATAAGGTTCAACCATCGTTTGTCAAAGATCGAAGAGCAATGAAGGGGCACATTTTAAGATCAATTCCTTTTTCTGTTTCACAGAGAGAATATGAAGAATTTAAAATCCGTGTCAATGGACTTGTTGCAAAGGCTCAAAAGATTCCTGAAGAAGGATGGGTGATGCAAGATGGTACGCCATGGCCCGGAAACAACACGAGAGACCATCCAGGAATGATTCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGTAATGAACTTCCACGTTTGGTCTATGTTTCTCGTGAAAAACGTCCAGGGTTCCAACACCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGAGTGTCAGCGGTCCTTACTAATGGACCTTTCTTGTTGAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGAGAAGCTATGTGCTTTATGATGGATCCGAACCTTGGGAAAAATGTATGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAAGAATGATAGATATGCCAACCGTAATACTGTTTTCTTTGATATAAATTTGAGAGGTTTGGATGGTATTCAAGGCCCTGTTTATGTGGGTACTGGGTGTGTATTCAATAGAACGGCATTATATGGCTATGAACCCCCTATTAAACCTAAGCATAAAAAACCTGGGTTGCTTTCTTCACTCTGTGGTGGTAATCGGAAAAAGAGCTCAAAATCTAGCAAGAAAGGATCAGACAAGAAAAAATCTAGCAAGAATGTTGACCCAACTGTGCCCATCTTCAGTCTTGATGATATAGAAGAAGGGGTGGAAGGTGCTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTCTTTGTTGCCTCAACATTAATGGAAAATGGTGGCGTTCCTCAGTCTGCAACTCCAGAAACACTTCTTAAGGAGGCGATACATGTTATCAGTTGTGGTTATGAGGATAAAACAGATTGGGGAAGAGAGATAGGATGGATCTATGGTTCCGTCACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGTGGTTGGAGATCTATATACTGCATGCCCAAGCTCCCAGCGTTTAAAGGTTCTGCTCCTATCAATCTTTCAGATCGTCTGAACCAAGTGCTTCGATGGGCTTTAGGTTCGGTCGAAATTCTTCTAAGTCGACATTGTCCCATCTGGTACGGTTATAGTGGAAGGCTAAAGTGGCTCGAGAGGTTCGCATATGTGAACACCACAATCTATCCAGTCACTTCCATTCCACTTCTCATGTATTGTACCTTACCTGCTGTCTGTCTCCTGACTAACAAGTTCATTATTCCACAGATTAGTAACATTGCAAGTATATGGTTTATCTCTCTCTTTCTTTCCATCTTTGCTACTGGTATCCTTGAGATGAGGTGGAGTGGTGTTGGAATTGATGAGTGGTGGAGAAATGAACAATTTTGGGTTATTGGTGGTGTTTCGGCCCATCTTTTTGCTGTGTTCCAAGGTTTACTTAAAGTTCTTGCTGGAATTGACACTAACTTCACTGTTACCTCAAAGGCATCAGATGAGGATGGAGACTTTGCAGAACTCTACATGTTCAAATGGACAACCCTCCTCATCCCACCCACAACACTTCTCATCATAAACCTGGTTGGAGTTGTTGCAGGTATCTCCTATGCCATCAACAGTGGCTACCAATCATGGGGTCCCCTCTTTGGTAAACTCTTCTTTGCATTTTGGGTGATCATCCATCTCTACCCTTTCCTCAAAGGTCTCATGGGACGCCAGAACAGAACACCAACCATTGTGGTGGTCTGGTCCATTCTTCTTGCATCCATTTTCTCTCTGTTGTGGGTTCGAATAGACCCGTTTACCACCAAAGTCACTGGTCCTGATGTTGAGCAGTGTGGATTATGTGCAGTTAAATGGTTCATATTCAAGAAATCATGTTTTAAGTTATGTGCAGTTAATGTGGACCATACAGAAGAAATCAAATTAGAATCAAATCATTCAATGTTGTTTATTTTTTGTAATACTCTCAACATTCCTTCTATTCTTTTGGAGCTGTTTATCTTATTTATAAGCCATTCATCAGAAGACAATATTCTTGTATACACATCATTGCCATATGAATGA 3477 0.4285 MESEAEAGAKPLNALGGQVCQICGDNIGNNVDGNPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAILGDREEDGGADDGASDFNYNSENQNQKQKIAERMLGWQMAYGRAEEVGAPNYDKEVSHNHIPMLSSGQEVSGELSAASPERSSMASPGGRGKRVHNLQYSSDINQSPNIRVGDPGLGNVAWKERVDGWKMKQDKNVAPMSTGQATSERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIALRLVILCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFCKKYNIEPRAPEWYFALKIDYLKDKVQPSFVKDRRAMKGHILRSIPFSVSQREYEEFKIRVNGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGLLSSLCGGNRKKSSKSSKKGSDKKKSSKNVDPTVPIFSLDDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTDWGREIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFAYVNTTIYPVTSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTKVTGPDVEQCGLCAVKWFIFKKSCFKLCAVNVDHTEEIKLESNHSMLFIFCNTLNIPSILLELFILFISHSSEDNILVYTSLPYE* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01494 1158 SUPERFAMILY RING/U-box 6 87 - -
Lapu5g01494 1158 FunFam Cellulose synthase 476 650 - -
Lapu5g01494 1158 MobiDBLite consensus disorder prediction 658 693 - -
Lapu5g01494 1158 Pfam Cellulose synthase 346 1081 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lapu5g01494 1158 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 249 1054 - -
Lapu5g01494 1158 MobiDBLite consensus disorder prediction 145 171 - -
Lapu5g01494 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Lapu5g01494 1158 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 484 650 IPR029044 -
Lapu5g01494 1158 CDD mRING-HC-C4C4_CesA 18 68 - -
Lapu5g01494 1158 FunFam Cellulose synthase 3 94 - -
Lapu5g01494 1158 SUPERFAMILY Nucleotide-diphospho-sugar transferases 360 899 IPR029044 -
Lapu5g01494 1158 MobiDBLite consensus disorder prediction 73 103 - -
Lapu5g01494 1158 Pfam Zinc-binding RING-finger 10 85 IPR027934 -
Lapu5g01494 1158 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Lapu5g01494 1158 MobiDBLite consensus disorder prediction 145 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01494 Lapu-Chr5 28190957 28199933 Wgd