Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01287 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGTCTCCGTTGGACTGTTGAACTCCATGAACGCTTTGTCGATGCTGTTACTCAGCTTGGAGGACCTGATAAGGCTACTCCCAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGTCACCTTCAGAAATTTAGACTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATAGAGGTGCAGAGAAGATTGCATGAACAACTTGAGGTTCAAAAACACCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGAGAAAACATGGCATCTGCGGCCACTAACTTAAAAGGTGCTATTGCACCTCACCAAAGCATTCCTGACATGGGAGTGTTGAAGGAGTTTGGTTCCCCTCTTGGTTTTTCTTCTTTTCAAGATCTAGAGAATATTTATGGAGGTGACCAAATTGACCTTCAGCACAACATGGAGAAGCCACCTCTTGATCATGGGTTTATGCCAATCAACGAGAGTTTGTGTCTGGGGAAGAAGAGGTCCAACCCTTATAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGAACTCAGGCTTCAAGATCTGGGAGGGCCAGCCTCATCTTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGTGACCATATTCAGATTACACCACCAGGATCATTAGATAGAGGCAGCACTGACATTGATCCCATGTCAGATATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTTGTGGGGGAAAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCCCCTCTTCAGGCTGAAAGGATGAGTCCTATGATCAGTACTGGTACCATGGCACAAGGTAGAGGCTCACCGTTTGGGTGA 1119 0.4665 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGAIAPHQSIPDMGVLKEFGSPLGFSSFQDLENIYGGDQIDLQHNMEKPPLDHGFMPINESLCLGKKRSNPYSGSGKSPLIWSDELRLQDLGGPASSCLGPQDDPFKGDHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01287 372 MobiDBLite consensus disorder prediction 333 347 - -
Lapu5g01287 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 183 IPR044848 GO:0003700
Lapu5g01287 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Lapu5g01287 372 MobiDBLite consensus disorder prediction 1 20 - -
Lapu5g01287 372 FunFam Myb family transcription factor 34 92 - -
Lapu5g01287 372 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Lapu5g01287 372 Gene3D - 34 92 - -
Lapu5g01287 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Lapu5g01287 372 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Lapu5g01287 372 MobiDBLite consensus disorder prediction 333 372 - -
Lapu5g01287 372 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01287 Lapu-Chr5 25733025 25735757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01287 4 372 G2-like Transcription Factor Family AT1G79430 57.403 4.70e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu5g01287 Myb_DNA-binding 2e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01287 5 25733025 25735757 Lapu5g01287 5 25733025 25735757 ECH