Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01226 ATGGCTTCACTGCTGAATACAGTGTCACCAGCTGCAAATTTACGCCCCGAAACAAAGCGACCCACTTGTGGCGGTTTCTTCCACTCCCAGGTTGCGAATCTCCACAATTTTTCCCTCAACAAGGGTTTTTCTAGGGTTTCGGCTTCGACCCAGATTGCCATTACCCCAAAAGATACGGTTTTTAATCTCCCCAATTGGAGAGGTGGGAGGAATGACCCTAGGGGTAAAGAGCTGAGGGTATATGATGCATTCCTCCATTTAGAGTATTTGGTGGGTAAGGGCCAAAAGCCTGAGGTGACTCAAGCAACTCAGCTTTTGTATGATCTTTGCAAGTTTAACAAAGCTAGAAAGGCTGTTAAGGTGATGGATATGATGGTTGATTCAGGTATTATACCTGACGCAGCCTCTTATACATACTTGGTCAATTTTCTGTGCAAGAGAGGCAATGTTGGGTATGCACTTCAGTTGGTTGAGAAGATGGAGGGGCATGGTTTTCCAACTAGTACTGTTACCTATAACACTCTTGTTAAAGGCCTCTGCATGCACGGCAACTTGAACCAGAGTTTGCAGCTTTTGGATAAGTTGACAAAGAAGGGCTTGGTCCCGAATGCATTCACATTTTCTTTCCTTCTGGAAGCGGCATATAAGGAAAGGGGAGTGGATGAGGCCAAGAAGCTTCTTGCTGAGATAATTGACAAGGGTGGAGAGCCTAATTTGGTTAGTTACAATGTGCTGTTAACTGGGTTGTGCAAGGAGGAGAGAACTGAAGAAGCTATCAGACTCTTCAGGGAATTGCCTGCAAAAGGGTTCAGTCCTAGTGTTGTGAGTTACAACATTTTGCTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAAGCGAACGAACTTCTTGCAGAGATGGATAAAGAAGACCAGTCTCCCTCGGTGGTTACTTACAACATATTGATTACTTCACTTTCTTTTCATGGAAGAACAGAACAAGCTTTCCAGGTTTTGGATGAAATGACAAGGAGTGGGTTCAAGGTGAGTGCTACTAGCTATAATCCGATTGTTGCCCGCCTCTGCAAGGAAGGGAAGGTGGATCTTGTTGTTCAATGTATAGACCAAATGATTCACCGACGTTGTAATCCTAATGATGGAACGTACTGTGCTGTTGCAATGCTGTGTGAGCAAGGTAAGGTACAGGAGGCTTTCTTTATAATTCAGAGCTTGGGTAATAAACAAAGCAACCCTATGCATGACTTTTACAAAAACGTGATTGCAAGCCTGTGTAGGAAAGGGAACACATACGCAGCCTTTCAGATGTTATATGAAATGACAAAGTATGGATTTACTCCAGATTCCTTTACTTATTCATCTATGATAAGAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTTAAGATATTCAGGATTTTGGAAGAAAATGAACACATTCCTAATATTGATAACTACAACGCACTTATACTTGGATTTTGCAAAGCACGGAGAACGGACATGTCAATAGAGATATTTCTGATGATGATTAACAGAGGATGTGTGCCTAATGAGAATACCTATACCATTATTGTGGAAGGGCTTGCTTTTGAAGAGGAGACTGATATAGCAGCAGACCTGTTGAAAGAGTTGTGTGCGAAAGAGGTTCTGAGCCAAAGTACTGTTGAAAGGCTTTGTATGCAATTCGACTTTAAGGAATTAATAGCAGCAGAGTAG 1716 0.4289 MASLLNTVSPAANLRPETKRPTCGGFFHSQVANLHNFSLNKGFSRVSASTQIAITPKDTVFNLPNWRGGRNDPRGKELRVYDAFLHLEYLVGKGQKPEVTQATQLLYDLCKFNKARKAVKVMDMMVDSGIIPDAASYTYLVNFLCKRGNVGYALQLVEKMEGHGFPTSTVTYNTLVKGLCMHGNLNQSLQLLDKLTKKGLVPNAFTFSFLLEAAYKERGVDEAKKLLAEIIDKGGEPNLVSYNVLLTGLCKEERTEEAIRLFRELPAKGFSPSVVSYNILLRSLCYEGRWEEANELLAEMDKEDQSPSVVTYNILITSLSFHGRTEQAFQVLDEMTRSGFKVSATSYNPIVARLCKEGKVDLVVQCIDQMIHRRCNPNDGTYCAVAMLCEQGKVQEAFFIIQSLGNKQSNPMHDFYKNVIASLCRKGNTYAAFQMLYEMTKYGFTPDSFTYSSMIRGMCREGMLDEALKIFRILEENEHIPNIDNYNALILGFCKARRTDMSIEIFLMMINRGCVPNENTYTIIVEGLAFEEETDIAADLLKELCAKEVLSQSTVERLCMQFDFKELIAAE* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01226 571 Pfam PPR repeat 129 161 IPR002885 -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lapu5g01226 571 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 216 382 - -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Lapu5g01226 571 Gene3D Tetratricopeptide repeat domain 74 231 IPR011990 GO:0005515
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Lapu5g01226 571 Gene3D Tetratricopeptide repeat domain 304 372 IPR011990 GO:0005515
Lapu5g01226 571 Gene3D Tetratricopeptide repeat domain 232 303 IPR011990 GO:0005515
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lapu5g01226 571 SUPERFAMILY HCP-like 83 278 - -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Lapu5g01226 571 Pfam PPR repeat family 237 285 IPR002885 -
Lapu5g01226 571 Pfam PPR repeat family 307 348 IPR002885 -
Lapu5g01226 571 Pfam PPR repeat family 481 529 IPR002885 -
Lapu5g01226 571 Pfam PPR repeat family 168 213 IPR002885 -
Lapu5g01226 571 Pfam PPR repeat family 416 460 IPR002885 -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Lapu5g01226 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 275 308 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 449 482 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 136 166 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 170 204 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 240 274 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 310 343 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 416 448 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 346 378 IPR002885 -
Lapu5g01226 571 NCBIfam pentatricopeptide repeat 486 518 IPR002885 -
Lapu5g01226 571 Gene3D Tetratricopeptide repeat domain 385 568 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01226 105 564 Glycosyltransferase AT1G05670 24.784 7.93e-48 176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01226 5 24729514 24731940 Lapu5g01226 5 24729514 24731940 ECH