Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01005 ATGGCCACCATGCAACTCCAATGCCTAACCCTCGCTCGCTCCGCCGCACTCCCTTCCCTCACTTCCTCTCCTCCGATTGCCGTTACCGGCCGCCGCAACTCCGCTGCGCTGCCGCGCTACTCCGGCCTCCGTCTCCGACCCACCGCTCGGACCACTTTTTCGACTCGCGCCGCCTCGAGAACCGCTCCTCGCGGTGGACGCGTCGCTTGCGAGGTACAGAAGACCACTTTCGAAGTGGCCGCTATTACTGACGAAAATTGGCAATCACTTGTGCTGGAATCTGAGTCTCCTGTGCTGGTTGAATTCTGGGCTCCATGGTGTGGTCCTTGCCGAATGATCCATCCAATAATTGGTGAGCTGGCCCAGGAATATTCTGATAAGCTGAAGTGTTACAAACTCAATACTGATGAGAGCCCGTCAACTGCTAGCCGTTATGGGATTCGAAGTATCCCCACTGTCATTATTTTCAAGAATGGTGAGAAGAAAGATACAGTTATTGGAGCTGTGCCCAAGTCAACATTGACCTCAAGCATAGAAAAATTCCTGTGA 549 0.5355 MATMQLQCLTLARSAALPSLTSSPPIAVTGRRNSAALPRYSGLRLRPTARTTFSTRAASRTAPRGGRVACEVQKTTFEVAAITDENWQSLVLESESPVLVEFWAPWCGPCRMIHPIIGELAQEYSDKLKCYKLNTDESPSTASRYGIRSIPTVIIFKNGEKKDTVIGAVPKSTLTSSIEKFL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01005 182 PANTHER GEO12009P1 71 182 - -
Lapu5g01005 182 NCBIfam thioredoxin 83 181 IPR005746 GO:0015035
Lapu5g01005 182 CDD TRX_family 85 179 - -
Lapu5g01005 182 Gene3D Glutaredoxin 78 182 - -
Lapu5g01005 182 Pfam Thioredoxin 79 179 IPR013766 -
Lapu5g01005 182 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Lapu5g01005 182 PRINTS Thioredoxin family signature 106 115 - -
Lapu5g01005 182 PRINTS Thioredoxin family signature 146 157 - -
Lapu5g01005 182 PRINTS Thioredoxin family signature 98 106 - -
Lapu5g01005 182 FunFam Thioredoxin 73 182 - -
Lapu5g01005 182 SUPERFAMILY Thioredoxin-like 72 182 IPR036249 -
Lapu5g01005 182 ProSiteProfiles Thioredoxin domain profile. 70 182 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01005 Lapu-Chr5 20193917 20198891 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01005 5 20193917 20198891 Lapu5g01005 5 20193917 20198891 ECH