Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00329 ATGGATTCTTCAAGCATTTTGGGTAGCTCAATTTCTGAGCCTCATCATGGTTTGGAATTTGAATCTCATGAAGCTGCATATGCATTTTATAAAGAATATGCTAAGTCTGTTGGGTTTGGCACTGCTAAGCTGAGCAGTCGGCGATCTAGGGCATCCAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCTCGCCCTTCTCCAAAAATAGGTTGTAAAGCAAGCATGCATGTAAAGAGAAGGCAAGATGGTAAATGGTATGTCTACAGTTTTGTGAAGGAGCATAATCACGAACTTTTACCAGCTCAAGCTCATTTTTTTCGGAGTCACAGGAGTTCTGATCCACTAGGTAATGATGTTCGGATGCGTAGGCGGAAGACCTCAAATGCAGTTTCTAAATTATTTAGTGCATATCAGAATGTTGATTGCTTAGAGAACTTTGTGAAACATCAACATGATAAAGGAAGAAGTTTGGTTCTAGAAGCTGGCCATGCTCAATTACTTCTTGAGCTCTTCATGCACATGCAAGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTAAGAAATGTGTTTTGGGTTGATGCTAAAGGCTTGGAAGATTTTACTTACTTTTCTGATGTTGTTTCTTTTGACACAACATATTTCACTAGCAAATATAAAATACCTTTGGTACTTTTTGTTGGAGTAAACCATCACATTCAACCAACATTGCTTGGTTGTGCATTGATTGCTGATGAAACAATATATACCTATGCCTGGTTACTACAAACATGGCTGATAGCAATGGGGGAACGAGCTCCACAAGTTCTTCTCACTGACCAAAACGATGCTATTAAAGCAGCTGTTGCTGCTTTTCTTCCAGGAACACGCCATTGTTTTTGTTTGTGGCATATTTTGGAAAAGATACCTAAACAACAAGAATTTTTAGGTGCATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATACAAATCATGGACAGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGCTTTAGCCTTAGAGATGCTGAATGGGTTCGATCCTTATATGATGACCGTATGTATTGGGTGCCAACATTTATGAAAGATGTCTCCTTTGCTGGCTTGTCTACTAGTTCTCGCACTGAAAGTGTAAATTCATTGGTTGACAACTATATCCATGTTGATTCTTCTTTGAGAGAATTTATAGAACAGTATAGAGTGATTATTGAAGATAGACATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGTTGCTAGTTTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTTTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGATGGTGTGACTACTACTTATACTGTGAAAGATTTCGAAAATAATCAAAACTATTTGGTAGAATGGAACACATCCAGCTCAGATATATGCTGTTCATGTCGTTTGTTTGAATATAAAGGTTTTCTCTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCTTTGAGCAGGCATCCTATTGGTGAAAAATTGGAAGAGGTTCAATCAAAGGTGCGGCGATTCAATGATTTGTGTAGGCGGGCCATAATATTAGGCGAAGAAGGTTCTTTATCACAAGAAAGTTACTACATGGCTTTAGGTGCCATCAGTGAGGCACTAAAACAATGTGCAAATTTGAACAACCCTGTTGAGAATGGTATGAGACCTGATGCGACAGGTACCCATGTTGTTTGTAATGTTGAAGAAGAATATCAATCTATTATTACATCTAACAATAAGGTCCCTGATCCGAAACTGAATACGGGAAAGAAAGCTGTGAGAACTGGTGTGGCTGGTAGGAGTCAAGGAAGTGTTGAAAACAGTGGAGGAAATAAAGGAAAGGTATCTCATGTCGAAGCAGGTAGTGGGAAAGATGGTTTTCAACATATGGAGCTTACTGATCCGAGATCACAAGGTGTCATGCCAATGCAGTTTCACAATGTGGTACCTGCTCTGTTCCATAATGTTTCGGCACCATTTCACAGTGCACCTTCACCTCATATGCACGAGAATCGTTAG 2232 0.3858 MDSSSILGSSISEPHHGLEFESHEAAYAFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLGNDVRMRRRKTSNAVSKLFSAYQNVDCLENFVKHQHDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFTYFSDVVSFDTTYFTSKYKIPLVLFVGVNHHIQPTLLGCALIADETIYTYAWLLQTWLIAMGERAPQVLLTDQNDAIKAAVAAFLPGTRHCFCLWHILEKIPKQQEFLGAWHDSFMEKFNKCIYKSWTEEQFEKRWWKLVDSFSLRDAEWVRSLYDDRMYWVPTFMKDVSFAGLSTSSRTESVNSLVDNYIHVDSSLREFIEQYRVIIEDRHEEEAKANFDAWHETPDLKSPSPFEKQMLLVYTHEIFRKFQVEVLGAAACHLKKESDGVTTTYTVKDFENNQNYLVEWNTSSSDICCSCRLFEYKGFLCRHAIVVLQMSGVFSIPPKYILQRWTNAALSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYYMALGAISEALKQCANLNNPVENGMRPDATGTHVVCNVEEEYQSIITSNNKVPDPKLNTGKKAVRTGVAGRSQGSVENSGGNKGKVSHVEAGSGKDGFQHMELTDPRSQGVMPMQFHNVVPALFHNVSAPFHSAPSPHMHENR* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00329 743 SMART 26again6 517 544 IPR006564 GO:0008270
Lapu5g00329 743 CDD NTF2_like 351 441 - -
Lapu5g00329 743 MobiDBLite consensus disorder prediction 649 698 - -
Lapu5g00329 743 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Lapu5g00329 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 616 IPR031052 GO:0006355
Lapu5g00329 743 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Lapu5g00329 743 Pfam SWIM zinc finger 511 540 IPR007527 GO:0008270
Lapu5g00329 743 Pfam MULE transposase domain 227 320 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00329 Lapu-Chr5 2731244 2735854 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu5g00329 MULE 1.8e-25 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00329 5 2731244 2735854 Lapu5g00329 5 2731244 2735854 ECH
Lapu5g01576 5 28951223 28959629 Lapu5g00329 5 2731244 2735854 PCT