Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00323 ATGGAGAAAGATGGAGCTTGTTCTGAAGTGGTTGACATAGACAAGACAACTACGACACTTGAACCAGAAAAAGCTACCAGTGGTGGACTCTTTGTTCCTGGGAAGGACAGAGTGGTTTACGTTCCTCAGGAGAGAAAATCACGTTTAGGACTTGATGCCCTTGCCAGTGCAAAACGGGGAGGGTCTCAGTTTGATGGGGGATTTAAGTTGCCAAAAGAAAGAACTACTTCAATTGCAGCATCAGCAGAAGATGAAGAAAAGTCTGAGCTGTCTGTTGTTGAAGAAAGTGAACTGGGTGGGATTGTCAGCAGACACAAACACACTAATAGGAGATACCGTGAAACTACCACTGAAATATCATATGCAGAAAGTTCTGTGAGCGAAGATTGCTATGGTGATACTAACAAGATTCGTTCAACTGAGCAAGCGATCTCAAATGTTCCTCCATCACCTTCTGGATATGACAGGGAGGATCACAGGAGTGAGAGGAGGCATTCCAGGGATGATTCAAGAAGTGGTAGTGGAAGAGTGCGGCATCGAGACTACTATGAAACTAAGGGAGGATCTTATTCAGAAAGGGATTCACATAGTAGGTATGACCGTGATCATGGTAGAAAGCGAAGCAGATATGAAGATTCCAGGAGAACGCCTGGCAGGTCTGACTGGGATGATGGCAGGTGGGAATGGAGTGAAACTCCACGAAGGGACAGTGTCTCTAGTTCTAGACGGCATCAACCTTCGCCATCCCCAATGTTTTTGGGTGCCTCACCAGATGCTCGATTAGTTTCACCATGGTTGGGGGGCAACACACCTAATACTTCCTTTAATTCATCTTCCCCCTGGGACCATGTTTCTCCATCTCCTATCCCAATACGTGCTTCTGGATCTTCAGCCAAATCTTCTGTTTCTAGATACAATGGAAGGTCACATCAGCTTAATTTTTCGTCTGAAACTTCAAATACGTTTCAGGATGAAGTGGCTGATAAGTCTGAATTTGGTGAAGAACACAAGTATGAGATTACTGAAAGCATGCGTTTAGAGATGGAATATGATGCTGACCGAGCATGGTATGACAGAGAGGAAGGTAGCACATTGTTTGATGGCGATAACTCATCACTTTTTCTTGGAGATGAAGCTTCCTTTCAGAAAAAAGAGGCTGAGTTGGCCAAGAGACTGGTCCGAAGAGATGGGACCAAGATGTCCCTTGCACAGAGCAAGAAGTTGTCCCAGCTCACAGCTGATAATGCTCAATGGGAGGATAGGCAACTGCTGAGATCTGGAGCTGTTAGAGGTACAGAGGTTCAGACTGAATTTGATGATGAGGAAGAACACAAAGTTATTCTTCTTGTTCATGATACAAAGCCTCCTTTCCTTGATGGCAGAGTTGTTTTTACTAAGCAGGCTGAGCCAATTATGCCATTAAAAGATCCAACATCTGACATGGCTATAATATCTCGTAAAGGGTCTACTCTGGTTAGAGAAATCCATGAGAAGCAGAGTATGAACAAGTCTCGCCAACGCTTTTGGGAACTTGCAGGCTCAAAGCTTGGTGATATCTTGGGCGTTGAAAAATCGGCAGAGCAGATTGATGCAGACACAGCTGAAGTGGGCGAAGATGGTGAAATTGATTTTAAGGAGGAAGCCAAGTTTTCACAGCATTTGAAGAAGGGAGAAGCCGTGAGTGACTTTGCAAAGTCAAAAACCATTGCAGAGCAAAGACAATATCTGCCTATTTTTTCAGTGAGAGAAGAGTTATTACAGGTGGTTCGTGAAAATCAGGTGGTGGTGGTGGTTGGAGAAACTGGTTCAGGAAAGACAACACAATTGACACAGTATCTGCATGAGGATGGCTATACTATAGGTGGTATAGTGGGTTGCACCCAACCAAGACGTGTGGCAGCTATGAGTGTTGCCAAGAGAGTTAGTGAAGAGATGGATACAGAGTTGGGAGATAAAGTTGGTTATGCTATACGTTTTGAAGATGTGACTGGGCCAAGTACCATTATAAAGTACATGACTGATGGTGTACTTCTACGTGAAACACTCAAAGACTCTGATCTAGACAAGTATCGGGTTATTGTCATGGATGAAGCCCATGAAAGATCATTAAACACCGATGTTCTCTTTGGAATATTGAAGAAAGTTGTAGCCCAACGTCGTGATTTCAAGCTGATCGTCACATCTGCAACTCTGAATGCACAGAAATTTTCAAATTTCTTTGGAAGTGTACCGATTTTTCACATTCCTGGGCGAACATTTCCTGTGAATATATTATGGAGTAAAACTCCAGTTGAAGATTATGTTGAAGGTGCAGTGAAGCAAGCTATGACTATTCATATAACCAGTCCTCCTGGTGACATCCTTATCTTCATGACTGGCCAAGATGAGATTGAGGCAGCATGCTATGCCCTCGCAGAAAGAATGGAGCAGATGGTGTCGTCTTCAAATAAAGTTGTTCCTAAGCTCTTGATTCTTCCCATATACTCTCAGCTTCCTGCCGATTTACAAGCTAAGATATTTCAGAAAGCTGAAGATGGAGCCCGAAAATGCATTGTAGCCACTAATATTGCTGAGACATCATTAACTGTTGATGGTATCTTCTATGTGATAGACTCAGGCTATGGTAAAATGAAGGTGTATAACCCTAGGATGGGCATGGATGCTCTCCAAGTCTTCCCTGTTAGCCGGGCTGCTGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACCGGCCCTGGTACATGCTATAGGTTGTATACTGAGAGTGCTTACTTAAATGAAATGCTGCCTAGTCCTGTTCCAGAGATTCAGAGGACTAACCTTGGGAATGTGGTCTTGTTGCTGAAATCTCTGAAAGTTGAAAATCTACTTGATTTTGATTTCATGGATCCACCTCCCCAAGATAATATTCTCAATTCGATGTACCAGTTGTGGGTGCTGGGTGCCCTTAACAATGTGGGGGGATTAACTGATCTTGGGTGGAAAATGGTTGAATTCCCGCTGGACCCTCCACTTGCCAAGATGCTTTTGACGGGTGAACTATTAGGGTGTCTTGAGGAGGTTTTGACAATTGTTTCCATGCTTTCAGTACCATCTGTTTTCTTTAGACCCAAGGATCGGGCAGAGGAGAGTGACGCTGCACGGGAAAGATTTTTTGTGCCAGAGTCTGATCATTTAACCCTGTACAATGTTTATCAGCAATGGAAACAGCATGATTACAGAGGTGATTGGTGCAATGATCATTTCTTGCATGTAAAAGGTCTAAGAAAGGCTAGAGAGGTGAGATCCCAGTTGCTTGACATTCTCAAGATTTTGAAGATCCCCTTAACCTCATGTTGGCCTGATACAGACATTGTCAGAAAAGCAATTTGTTCTGCATATTTTCACAATGCAGCAAGATTAAAGGGTGTGGGAGAGTATGTTAACTGCAGGAATGGGATGCCATGTCATCTTCATCCCAGTAGTGCTCTCTATGGTATGGGCTGCACTCCTGAGTATGTGGTTTATCATGAGTTAATCCTGACCACAAAGGAGTACATGCAGTGTGCCACGGCAGTGGAGCCCCAGTGGCTTGCTGAGTTGGGACCCATGTTTTTCTCTGTTAAGGAGTCTGACACATCATTACTGGAGCATAAGAAGAGACAGAAACAAGAGAAAACAGCCATGGAGGAGGAGATGGAGAACTTGAAGAAGGTACAAGCAGAGATTGAGAGAGAAAGGAAACAAAAGGAGAAGGAAAAGACAGCTAAGCATCAGCAGCAAATCTCCATGCCAGGTTTACGAAAGGGTTCTTCCACATTCTTGAGACCAAAGAAGTTTGGTTTATAA 3825 0.4384 MEKDGACSEVVDIDKTTTTLEPEKATSGGLFVPGKDRVVYVPQERKSRLGLDALASAKRGGSQFDGGFKLPKERTTSIAASAEDEEKSELSVVEESELGGIVSRHKHTNRRYRETTTEISYAESSVSEDCYGDTNKIRSTEQAISNVPPSPSGYDREDHRSERRHSRDDSRSGSGRVRHRDYYETKGGSYSERDSHSRYDRDHGRKRSRYEDSRRTPGRSDWDDGRWEWSETPRRDSVSSSRRHQPSPSPMFLGASPDARLVSPWLGGNTPNTSFNSSSPWDHVSPSPIPIRASGSSAKSSVSRYNGRSHQLNFSSETSNTFQDEVADKSEFGEEHKYEITESMRLEMEYDADRAWYDREEGSTLFDGDNSSLFLGDEASFQKKEAELAKRLVRRDGTKMSLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEEHKVILLVHDTKPPFLDGRVVFTKQAEPIMPLKDPTSDMAIISRKGSTLVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKSAEQIDADTAEVGEDGEIDFKEEAKFSQHLKKGEAVSDFAKSKTIAEQRQYLPIFSVREELLQVVRENQVVVVVGETGSGKTTQLTQYLHEDGYTIGGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILWSKTPVEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQMVSSSNKVVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDSGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLTGELLGCLEEVLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLRKAREVRSQLLDILKILKIPLTSCWPDTDIVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPEYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKQEKTAMEEEMENLKKVQAEIERERKQKEKEKTAKHQQQISMPGLRKGSSTFLRPKKFGL* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00323 1274 SMART ha2_5 971 1061 IPR007502 GO:0004386
Lapu5g00323 1274 MobiDBLite consensus disorder prediction 1236 1250 - -
Lapu5g00323 1274 Pfam Helicase associated domain (HA2) 973 1059 IPR007502 GO:0004386
Lapu5g00323 1274 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1118 1195 IPR011709 -
Lapu5g00323 1274 MobiDBLite consensus disorder prediction 266 286 - -
Lapu5g00323 1274 Gene3D - 526 751 IPR027417 -
Lapu5g00323 1274 Pfam Helicase conserved C-terminal domain 781 910 IPR001650 -
Lapu5g00323 1274 SMART ultradead3 574 758 IPR014001 -
Lapu5g00323 1274 FunFam pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 529 751 - -
Lapu5g00323 1274 CDD SF2_C_RHA 753 918 - -
Lapu5g00323 1274 Pfam DEAD/DEAH box helicase 582 735 IPR011545 GO:0003676|GO:0005524
Lapu5g00323 1274 MobiDBLite consensus disorder prediction 118 149 - -
Lapu5g00323 1274 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 955 1054 - -
Lapu5g00323 1274 PANTHER ATP-DEPENDENT RNA HELICASE 524 1218 - -
Lapu5g00323 1274 Gene3D - 956 1112 - -
Lapu5g00323 1274 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 752 930 - -
Lapu5g00323 1274 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 763 951 IPR001650 -
Lapu5g00323 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 1105 IPR027417 -
Lapu5g00323 1274 Gene3D - 752 929 IPR027417 -
Lapu5g00323 1274 Coils Coil 1208 1252 - -
Lapu5g00323 1274 MobiDBLite consensus disorder prediction 153 241 - -
Lapu5g00323 1274 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 586 749 IPR014001 -
Lapu5g00323 1274 MobiDBLite consensus disorder prediction 1236 1274 - -
Lapu5g00323 1274 SMART helicmild6 806 910 IPR001650 -
Lapu5g00323 1274 MobiDBLite consensus disorder prediction 77 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00323 Lapu-Chr5 2678908 2688299 Dispersed/Proximal