Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00320 ATGTCTCTGATGAGTGGTGGTGACCAATCATGTGTTGAATGCAGTTCGGATTTAGAAGTTGATGATATTCGATGCCCCAGTATAGCAGAGAAAGATGTCAGTGATGAAGAGATTGAAGCAGAAGAATTGGAGCGGCGGATGTGGAAGGATCGAATCAAACTCAAAACTAAGGGAAGATCTTATTCAGAAAGGGATTCACATAGTAGGTATGACTGTGATCATGGTAGAAAGCGAAGCAGATATGAAGATTCCAGGAGAACGCCTGGCAGGTCTGACTGGGATGATGGGAGGTGGGAATGGAGTGAAACTCCACGAAGGGACAGTGTCTCTAGTTCTAGACGGCATCAACCTTCGCCATCCCCAATGTTTTTGGGTGCCTCACCAGATGCTCGATTAGTTTCACCATGGTTGGGGGCCAACACACCTAATTCATCCTTTAATTCATCTTCCCCCTGGGACCATGTTTCTCCATCTCCTATCCCAATACGTGCTTCTGGATCTTCAGCCAGATCTTCTGTTTTTAGACACAATGAAAGGTCACATCAGCTTAATTTTTCATCTGAAACTTCAAATACGTTTCAGGATGAAGTGGCTGATAAGGCTGAGTTTGGTGAAGAACACAAGTATGAGATTACTGAAAGCATGCGTTTAGAGATGGAATATGATGCTGACCGAGCATGGTATGACAGAGAGGAAGGTAGCACATTGTTTGATGGCAATAACTCGTCACTTTTTCTTGGAGATGAAGCTTCCTTTCAGAAAAAAGAGGCTGAGTTGGCCAAGAGACTGGTCCGAAGAGATGGGACCAAGATGTCCCTTGCACAGAGCAAGAAGTTGTCCCAGCTCACAGCTGATAAAGCTCAATGGGAGGATAGGCAACTGCTGAGATCTGGAGCTGTTAGAGGTACAGAGGTTCAGACTGAATTTGATGATGAGGAAGAACACAAAGTTATTCTTCTTGTTCATGATACAAAGCCTCCTTTCCTTGATGGCAGAGTTGTTTTTACTAAGCAGGCTGAGCCAATTATGCCATTAAAAGATCCAACATCTGACATGGCTATAATATCTCGTAAAGGGTCTACTCTGGTTAGAGAAATCCATGAGAAGCAGAGTATGAACAAGTCTCGCCAACGCTTTTGGGAACTTGCAGGCTCAAAGCTTGGTGATATCTTGGGCGTTGAAAAATCAGCAGAGCAGATTGATGCAGACACAACTGAAGTGGGCGAAGATGGTGAAATTGATTTTAAGGAGGAAGCCAAGTTTTCACAGCATTTGAAGAAGGGAGAAGCCGTGAGTGACTTTGCAAAGTCAAAAACCATTGCAGAGCAAAGACAATATCTGCCTATTTTTTCAGTGAGAGAAGAGTTATTACAGGTGGTTCGTGAAAATCAGGTGGTGGTAGTGGTTGGAGAAACTGGTTCAGGAAAGACAACACAATTGACACAGTATCTGCATGAGGATGGCTATACTATAGGTGGTATAGTGGGTTGCACCCAACCAAGACGTGTGGCAGCTATGAGTGTTGCCAAGAGAGTTAGTGAAGAGATGGATACAGAGTTGGGAGATAAAGTTGGCTATGCCATACGTTTTGAAGATGTGACTGGGCCAAGTACCATTATAAAGTACATGACTGATGGTGTACTTCTACGTGAAACACTCAAAGACTCTGATCTAGACAAGTATCGGGTTATTGTCATGGATGAAGCCCATGAAAGATCATTAAACACCGATGTTCTCTTTGGAATATTGAAGAAAGTTGTAGCCCAACGTCGTGATTTCAAGCTGATCGTCACATCTGCAACTCTGAATGCACAGAAATTTTCAAATTTCTTTGGAAGTGTACCGATTTTTCACATTCCTGGGCGAACATTTCCTGTGAATATATTATGGAGTAAGACTCCAGTTGAAGATTATGTTGAAGGTGCAGTGAAGCAAGCTATGACTATTCATATAACCAGTCCTCCTGGTGACATCCTTATCTTCATGACTGGCCAAGATGAGATTGAGGCAGCATGCTATGCCCTCGCAGAAAGAATGGAGCAGATGGTGTCGTCTTCAAATAAAGTTGTTCCTAAGCTCTTGATTCTTCCCATATACTCTCAGCTTCCTGCCGATTTACAAGCTAAGATATTTCAGAAAGCTGAAGATGGAGCCCGAAAATGCATTGTAGCCACTAATATTGCTGAGACATCATTAACTGTTGATGGTATCTTCTATGTGATAGACTCAGGCTATGGTAAAATGAAGGTGTATAACCCTAGGATGGGCATGGATGCTCTCCAAGTCTTCCCTGTTAGCCGGGCTGCTGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACCGGTCCTGGTACATGCTATAGGTTGTATACTGAGAGTGCTTACTTAAATGAAATGCTTCCCAGTCCTGTTCCAGAGATTCAGAGGACTAACCTTGGGAATGTGGTCTTGTTGCTGAAATCTCTGAAAGTTGAAAATCTACTTGATTTTGATTTCATGGATCCACCTCCTCAAGATAATATTCTCAATTCGATGTACCAGTTGTGGGTGCTGGGTGCCCTTAACAATGTGGGGGGATTAACTGATCTTGGGTGGAAAATGGTTGAATTCCCGCTAGACCCTCCACTTGCCAAGATGCTTTTGACGGGTGAACTGTTAGGGTGTCTAGAGGAGGTTTTGACAATTGTTTCCATGCTTTCAGTACCATCTGTTTTCTTTAGACCCAAGGATCGGGCAGAGGAGAGTGACGCTGCACGGGAAAGATTTTTTGTGCCAGAGTCTGATCATTTAACCCTGTACAATGTTTATCAGCAATGGAAACAGCATGATTACAGAGGTGATTGGTGCAATGATCATTTCTTGCATGTAAAAGGTCTTAGAAAGGCTAGAGAGGTGAGATCCCAGTTGCTTGACATTCTCAAGACTTTGAAGATCCCCTTAACCTCATGTTGGCCTGATACAGACATTGTCAGAAAAGCAATTTGTTCTGCATATTTTCACAATGCAGCAAGATTAAAGGGTGTGGGAGAGTATGTTAACTGCCGGAATGGGATGCCATGTCATCTTCATCCCAGTAGTGCTCTCTATGGTATGGGCTGCACTCCTGAGTATGTGGTTTATCATGAGTTAATTCTGACCACAAAGGAGTACATGCAGTGTGCCACGGCAGTGGAGCCCCAGTGGCTTGCTGAGTTGGGACCCATGTTTTTCTCTGTTAAGGAGTCTGACACATCATTACTGGAGCATAAGAAGAGACAGAAACAAGAGAAAACAGCCATGGAGGAGGAGATGGAGAACTTGAAGAAGGTACAAGCAGAGATTGAGAGAGAAAGGAAACAAAAGGAGAAGAAAAAGACAGCTAAGCATCAGCAGCAAATCTCCATGCCAGGTTTACGAAAGGGGTCTTCCACATTCTTGAGACCAAAGAAGTTTGGTTTGTAA 3438 0.4363 MSLMSGGDQSCVECSSDLEVDDIRCPSIAEKDVSDEEIEAEELERRMWKDRIKLKTKGRSYSERDSHSRYDCDHGRKRSRYEDSRRTPGRSDWDDGRWEWSETPRRDSVSSSRRHQPSPSPMFLGASPDARLVSPWLGANTPNSSFNSSSPWDHVSPSPIPIRASGSSARSSVFRHNERSHQLNFSSETSNTFQDEVADKAEFGEEHKYEITESMRLEMEYDADRAWYDREEGSTLFDGNNSSLFLGDEASFQKKEAELAKRLVRRDGTKMSLAQSKKLSQLTADKAQWEDRQLLRSGAVRGTEVQTEFDDEEEHKVILLVHDTKPPFLDGRVVFTKQAEPIMPLKDPTSDMAIISRKGSTLVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKSAEQIDADTTEVGEDGEIDFKEEAKFSQHLKKGEAVSDFAKSKTIAEQRQYLPIFSVREELLQVVRENQVVVVVGETGSGKTTQLTQYLHEDGYTIGGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILWSKTPVEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQMVSSSNKVVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDSGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLTGELLGCLEEVLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDIVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPEYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKQEKTAMEEEMENLKKVQAEIERERKQKEKKKTAKHQQQISMPGLRKGSSTFLRPKKFGL* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00320 1145 Coils Coil 1079 1119 - -
Lapu5g00320 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 976 IPR027417 -
Lapu5g00320 1145 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 623 801 - -
Lapu5g00320 1145 Gene3D - 397 622 IPR027417 -
Lapu5g00320 1145 Pfam Helicase conserved C-terminal domain 652 781 IPR001650 -
Lapu5g00320 1145 MobiDBLite consensus disorder prediction 55 112 - -
Lapu5g00320 1145 MobiDBLite consensus disorder prediction 55 126 - -
Lapu5g00320 1145 MobiDBLite consensus disorder prediction 1107 1145 - -
Lapu5g00320 1145 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 457 620 IPR014001 -
Lapu5g00320 1145 CDD SF2_C_RHA 624 789 - -
Lapu5g00320 1145 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 634 822 IPR001650 -
Lapu5g00320 1145 PANTHER ATP-DEPENDENT RNA HELICASE 395 1089 - -
Lapu5g00320 1145 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 826 925 - -
Lapu5g00320 1145 Gene3D - 623 800 IPR027417 -
Lapu5g00320 1145 SMART ha2_5 842 932 IPR007502 GO:0004386
Lapu5g00320 1145 FunFam pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 400 622 - -
Lapu5g00320 1145 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 989 1066 IPR011709 -
Lapu5g00320 1145 Pfam DEAD/DEAH box helicase 453 606 IPR011545 GO:0003676|GO:0005524
Lapu5g00320 1145 Gene3D - 827 983 - -
Lapu5g00320 1145 Pfam Helicase associated domain (HA2) 844 930 IPR007502 GO:0004386
Lapu5g00320 1145 SMART helicmild6 677 781 IPR001650 -
Lapu5g00320 1145 SMART ultradead3 445 629 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00320 Lapu-Chr5 2638037 2646067 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00320 19 55 EIL Transcription Factor Family AT1G73730 64.865 6.40e-08 54.7