Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00152 ATGAGGACAAGAGTTCTTCCCTCTGTATTGTTCCTTCTTCTACTTCACCCCTCTGAAGGCGAACACATTGCCATTTACTGGGGTCAAAACGTCAATGAGGGAAACCTTACCCAAACGTGTGCAACAGGAAAATACTCCTACGTCAACATAGCTTTCCTTTCCACCTTTGGGAATGGCCAAACCCCAAAACTGAACCTGGCTGGCCATTGTGACCCGTCTTCTAACGGGTGTCTTAGTCTGGGAAGAGAAATTAGGAATTGTCAAGAGCAAGGGATCAAGGTGATGCTTTCTATCGGAGGAGGAAGTGGTAATTATTCTCTAACTTCCCTTGAGGATGCCAAGAATGTTTCGGATTACTTGTGGGACAATTTCCTGGGTGGCTCATCCTCATCACGCCCATTTGGGGATGCAGTCTTAGATGGCATTGACTTTGTCATAGCGGCAGTTGTGGATGTTCTTGGTATCATTGTTTATGCCTATAAAGCATGA 489 0.456 MRTRVLPSVLFLLLLHPSEGEHIAIYWGQNVNEGNLTQTCATGKYSYVNIAFLSTFGNGQTPKLNLAGHCDPSSNGCLSLGREIRNCQEQGIKVMLSIGGGSGNYSLTSLEDAKNVSDYLWDNFLGGSSSSRPFGDAVLDGIDFVIAAVVDVLGIIVYAYKA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00152 162 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 21 162 IPR001223 GO:0005975
Lapu5g00152 162 PANTHER ENDOCHITINASE 12 147 - -
Lapu5g00152 162 Gene3D Glycosidases 22 154 - -
Lapu5g00152 162 Pfam Glycosyl hydrolases family 18 23 146 IPR001223 GO:0005975
Lapu5g00152 162 SUPERFAMILY (Trans)glycosidases 18 147 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00152 Lapu-Chr5 1257910 1258599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00152 1 146 Glycoside Hydrolase AT5G24090 63.333 7.22e-65 199