Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01177 ATGAATACAGAAGGAGACATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCGAGTTCTCAGATGGGGTGTCAGATTCAGGCCAACTCTGCAACCAGGAATGCTTGCAGTGGCTTAAAGAAAACAGAAGTTGAAGTGCCCTATACTGAAAACTCAGAGCAACGGGAGAATTATTCTGATTCAAGGGATAGCAAACAAGAGTCCCCACATAAAATTCTGCAGGATAATGGGTCAAAAATAAATACCAAAGCTGTGGAAAATGATACAGTGAGTAGCAGTACAGATCAAGATAAAATCTTCAAGAAACCAGACAAGATTCTTCATTGTCCCCGATGCAACAGTCTAGACACTAAATTCTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACGATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCAGATTATTGTAGCTTGTGACGGCATTCCAACTACCAGGTTCGAAGCAAACGACTCTTCTCAACACCAACTTGTCACAACTCTTCAATCTGCTGCAGTTTTCAGGTCTTCAACAGAAAATGGTACTGTATTGAAATTTTGTCCAGATGCCCCTCCTCTTTGTGAATCCATGGAGTCAATGCTCAATCTTAAAGAACAAAATCGAAGTGTTGACGAAAATACTGTCAATTGTGCAGAAAAAGGGGAGGAGGAAACATCCCTATGTGGATCATCTATGACCAATGCTTGTACTCCAAGAAACACATTAACTCAACCTACTGCATCAAAACCTTTGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGATTGGAACAATGTTGCTTCCACTGCACCAGTTCATCCCTCTTCACTACAGATGTGTAACCCTTATAGTGCTGACCCTGCTTCAATGCAGTGGTGTCCCACACCAATGATGGCTGTTCCCACCATCTACCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGGGTGGACCACCTGTGTGGGGTGCTGGAACAGGAGCAGTTTCAATGGGTTTCAATGCCTGCCTTTCACCTACATCCTCTACTAGTAATAGCTGCTGCTCGGGCAACAGCTCCCCAACACTCGGCAAACACACAAGAGATAATGTTTCCACAGATGAAGAAAAACCAGACATGTGTGTCTTGGTTCCAAAGACCCTTAGAATTGATGATCCAAATGAGGCCTCAAAATGTCCTGCGGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGACCGTGTCTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGAGCTCATGCATTCCAAGAGGGCATATAA 1443 0.4442 MNTEGDMSNKDPGIRLFGRKIPLPESQIPASSQMGCQIQANSATRNACSGLKKTEVEVPYTENSEQRENYSDSRDSKQESPHKILQDNGSKINTKAVENDTVSSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRQIIVACDGIPTTRFEANDSSQHQLVTTLQSAAVFRSSTENGTVLKFCPDAPPLCESMESMLNLKEQNRSVDENTVNCAEKGEEETSLCGSSMTNACTPRNTLTQPTASKPLQCYPVPPWIFPWNPDWNNVASTAPVHPSSLQMCNPYSADPASMQWCPTPMMAVPTIYPPSFPLQFVPGSYWGGPPVWGAGTGAVSMGFNACLSPTSSTSNSCCSGNSSPTLGKHTRDNVSTDEEKPDMCVLVPKTLRIDDPNEASKCPAEGTISKRAKPREGKDRVLGVSQILEANPAAISRAHAFQEGI* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01177 480 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Lapu4g01177 480 MobiDBLite consensus disorder prediction 58 108 - -
Lapu4g01177 480 MobiDBLite consensus disorder prediction 85 106 - -
Lapu4g01177 480 MobiDBLite consensus disorder prediction 430 452 - -
Lapu4g01177 480 PANTHER CYCLIC DOF FACTOR 2 9 478 IPR045174 GO:0003700|GO:0006355
Lapu4g01177 480 MobiDBLite consensus disorder prediction 58 84 - -
Lapu4g01177 480 MobiDBLite consensus disorder prediction 392 413 - -
Lapu4g01177 480 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Lapu4g01177 480 Pfam Dof domain, zinc finger 116 173 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01177 Lapu-Chr4 28417278 28420146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01177 11 478 C2C2-Dof Transcription Factor Family AT5G39660 33.270 7.41e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu4g01177 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01177 - - ccaj:109792807 807.749