Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03829 ATGAGAAACTCTCTGCAGTTTTTTTGGCCTCAGATCTTGTGTTTCCTATTATTCAGTTTTCAATATGAAGTTCAAACAAAGTCCACCATTGAACCATGCAATTCCTCAGATTCCTGCCCCTCTCTCCTCTCTTATGTCTTGCCCTGGGACTCCAAAGTATCCGAAATCGCCACTCGTTTCCACGTAAATGTCTTTGATATCTTGGCCTCCAACTCTTTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTCAGAGCCAAAACCTTTCTCAAAATACCCATCTTCTGCTGTTGTGTGGATGGCATCCGAAGGTCCATGTCAGCCCTTTACACTGTTCATGCAGCAGACACACTTGCCTCCATATCAGAAGGTTATGGTGGGTTGGTTAGTGGTGAACAAATCAAGAGTGTGAACAGCATCAATGCCACCAACCCCTTGACGAGTGGAGGCACCCTTGTTATTCCACTGCCATGCACATGTTTTAACAATGTTAACAATGGGGGAACCGCTGTTTACATGTCATATGTTGTGCAGAGAAGAGAGAACCTGAGGAGCATAGCATCCAAGTTTGCCACAACTATTTCGGACTTGGAAACTGTAAATGGATTTTGGGAAGCTACGGTAGATCCCGGAGACATTCTATCTATTCCCATTGCAGCATGTTCATCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGTTCATATACATTAACTGCCAGCAACTGCATCAAATGCAGTTGCGAACCAATGGATATTACGATGCGATGTGTTCCTTCTGGACTAGATGTCCCCTGCTATAACTTACGTTGCAAAAAATCCAATCTTATAATTGGCAATGAATGTGTGCAGCATTCAGAAACAGCTTGCAATGTGATCCAATGTGTTTACCGTGGCCATAGGGGTGGAAAAATTCTGAGTAGTATGAAGAACTCTACTTACCTCCAGTGCCCTGATAATCTGAGTCATAGTGGAGCATCATGTTGGCCTTTCTCGTCATATCCTGAGGACCCATTTGGTATGTCTCCAAAGCCATCTCCCTCCTTGCCACTTCCAGTTTCTAAGGCTTCTCTGAGGACTAGTGCCTCCAATGGAAGTCTTGGTCAATTTCTAATCAATGTGCTTCAAATATTCTTATTTCTAAACTTTATCCTTTATTTTCTGATTTGA 1185 0.4304 MRNSLQFFWPQILCFLLFSFQYEVQTKSTIEPCNSSDSCPSLLSYVLPWDSKVSEIATRFHVNVFDILASNSFFPITSSSAHQILRAKTFLKIPIFCCCVDGIRRSMSALYTVHAADTLASISEGYGGLVSGEQIKSVNSINATNPLTSGGTLVIPLPCTCFNNVNNGGTAVYMSYVVQRRENLRSIASKFATTISDLETVNGFWEATVDPGDILSIPIAACSSATLKWYDESMIVPNGSYTLTASNCIKCSCEPMDITMRCVPSGLDVPCYNLRCKKSNLIIGNECVQHSETACNVIQCVYRGHRGGKILSSMKNSTYLQCPDNLSHSGASCWPFSSYPEDPFGMSPKPSPSLPLPVSKASLRTSASNGSLGQFLINVLQIFLFLNFILYFLI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03829 394 SMART LysM_2 175 218 IPR018392 -
Lapu3g03829 394 SMART LysM_2 110 156 IPR018392 -
Lapu3g03829 394 Pfam LysM domain 111 156 IPR018392 -
Lapu3g03829 394 Pfam LysM domain 176 218 IPR018392 -
Lapu3g03829 394 CDD LysM 111 155 IPR018392 -
Lapu3g03829 394 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
Lapu3g03829 394 Gene3D LysM domain 104 165 IPR036779 -
Lapu3g03829 394 Gene3D LysM domain 166 226 IPR036779 -
Lapu3g03829 394 ProSiteProfiles LysM domain profile. 109 155 IPR018392 -
Lapu3g03829 394 SUPERFAMILY LysM domain 174 218 IPR036779 -
Lapu3g03829 394 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 324 - -
Lapu3g03829 394 CDD LysM 175 217 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03829 Lapu-Chr3 61839857 61842461 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03829 10 362 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 42.541 1.45e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03829 - - vra:106767878 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03829 3 61839857 61842461 Lapu3g03829 3 61839857 61842461 ECH