Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03110 ATGGCCCAAGTACAAAGTGGCCAAGCCAGTGAAGGGATTAAGCTGTTCGGAACAACGATTACCTTGTGTGGTAGAGAAAGAAAAGCAGATAGTAAAGTGAGTGAAGACGGAACAGAAGAGAAGAGACCTGATAGGATCATACCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCTAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACCGCCGGCGGAGCCCTTCGCAACGTCCCAATAGGAGCAGGTCGGCGAAAGGCTAAACCACAGTTTAGTTTCGAAGAGAGCTTGATCTTAGATGAATGGCATGTTGCCACCGTCACTCACGGTGATTTCCGGCAGTTTTTTCCGTCTAAAAGGCGGAGGATCAACTCAGGTGGTCAACGTCAACCTTGTTAA 435 0.4805 MAQVQSGQASEGIKLFGTTITLCGRERKADSKVSEDGTEEKRPDRIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPQFSFEESLILDEWHVATVTHGDFRQFFPSKRRRINSGGQRQPC* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03110 144 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Lapu3g03110 144 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Lapu3g03110 144 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
Lapu3g03110 144 PANTHER CYCLIC DOF FACTOR 2 33 104 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03110 Lapu-Chr3 54368547 54369099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03110 8 140 C2C2-Dof Transcription Factor Family AT2G34140 55.152 9.26e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g03110 zf-Dof 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03110 - - gmx:100527802 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03110 3 54368547 54369099 Lapu3g03110 3 54368547 54369099 ECH