Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03047 ATGGTAGTAGTCACCCCTCCAACAGCGTCTAACAAATGGACACAGCTATCTTCTCTTGAATCTCAGATAGATGATCGCAAGGCCTCTATGGGAAGAGTCATGGAAAAACCAAGCCAAGATCTTCTTCAGCTGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCGCAGCCTAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGTTGCAGAAAAAACAAGCGTGTCAAACGTCCAAACGGTGACGCTTCTGCTAACTCTCCTCCTTCTTCCTCCACTCCTAGCTCCAATTCAAACCCTCCTTCACGGCCTCACATCGCTTCTAGTTCAACCGCAAACCATGTCAATGTAAACCCTTTGTTTTATGGGCTACCCAATAGTAACGGTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAACTGAATGCCCTTGGGCTAGGTTTTTCATCCGGGGTTAACGTTATCTCAAGTGAAGCTAGTGATAATGGGTTTAGTACTGCTACTACTACTACTTCAAATACTAACAACTTTCTTTCTGCTTATAATTCCATTTTTGGTTCTTCTTCTTCCTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCTACTCTCCTGCAACAGAAGTTTATCGGTGGTGCTGGGGTGAAGGGTGATCATGGTGGCAACAGTTTCCAGGGTTTGGCACCGCTACAAGGGCTGCAAATGGAAGGGAGTGATAATATTAGCTCAAAAGAAGCGAAAGCTGAAGGACAAAACAAGTTGGAGTTGGAGTGGAGTAATAATAACAATAACAATGGTGGTGGTGGTGCTTGTCAAAACCAGATAGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACAGGTTTGAGTGCTTGGAGTGATCAACCTAACTTTGGTCCTTCAGTCACTTCTCTGATCTAG 1047 0.4565 MVVVTPPTASNKWTQLSSLESQIDDRKASMGRVMEKPSQDLLQLQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNGDASANSPPSSSTPSSNSNPPSRPHIASSSTANHVNVNPLFYGLPNSNGCDVMDVPFPRFNLQSQLNALGLGFSSGVNVISSEASDNGFSTATTTTSNTNNFLSAYNSIFGSSSSSTCAPSTPVMASLLSSTLLQQKFIGGAGVKGDHGGNSFQGLAPLQGLQMEGSDNISSKEAKAEGQNKLELEWSNNNNNNGGGGACQNQIEHVGLSDPNSLYWNTATGLSAWSDQPNFGPSVTSLI* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03047 348 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Lapu3g03047 348 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Lapu3g03047 348 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Lapu3g03047 348 MobiDBLite consensus disorder prediction 94 138 - -
Lapu3g03047 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 221 IPR045174 GO:0003700|GO:0006355
Lapu3g03047 348 MobiDBLite consensus disorder prediction 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03047 Lapu-Chr3 53667749 53670310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03047 49 152 C2C2-Dof Transcription Factor Family AT1G28310 69.524 1.95e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g03047 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03047 - - vum:124826825 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03047 3 53667749 53670310 Lapu3g03047 3 53667749 53670310 ECH
Lapu3g03047 3 53667749 53670310 Lapu6g01271 6 12528913 12531093 PCT