Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03046 ATGGAACAAGAAGGGAGAGAGCAAAACAGACAAATTCAGCTTGCAGTTGCAGCACCACAACCGCAGCAGAAATGTCCACGCTGCGATTCCATGAACACCAAGTTCTGCTACTTCAACAACTATAGTCTCTCACAGCCTCGTCACTTCTGCAAAACGTGTAAAAGGTACTGGACGCATGGTGGAACCTTCAGGAACATACCCGTTGGTGGTGTTTCCCGTAAAGCGAAACGTGGCAAAACATATTCTTCACCTTCCAATTCACTCACACAACCACGGTCAAACTTCATGAGTCCTTCTCCACCACTCACTATGGTTCAGTCAACTACCCCTTACTATCAACTTGGTGGTGGTGGAAGAGGGCATCTGTCATCTCTGGCAACGCTTCATTCTCTGACCACATCACAGCCTTTCAATCAGTACCAGAATGTTGCGGGTTCTTCTTCTAATTTACCTCTTCTGTCTGGCTTCAACGCTTCTTCTATTCCACCGCGGTTCCACCACATGGGAGTCAGGGAGAGGGTAGAATCTCTCCATCCTGAACCACAGCGTTTGCTTCTATCAAACATGGCCAGTGGCAGTGCTGCTTCTCGCTCTGCTCATTGCCCACAAAGCTTGATTAATAATGTTTCAAGTACAAACCTTATGGCTGGTTCTGATGCCTCTTCGTGGAGTGATAATATCAACGCCACTTCCATCAGTGGCAACTCTGATCATCACAATGTCAAAGGTGGTTCTTCCTCTTTGATCCCAAATCACTGGCTTCATCTCCCAGGAATCTAA 780 0.4705 MEQEGREQNRQIQLAVAAPQPQQKCPRCDSMNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGVSRKAKRGKTYSSPSNSLTQPRSNFMSPSPPLTMVQSTTPYYQLGGGGRGHLSSLATLHSLTTSQPFNQYQNVAGSSSNLPLLSGFNASSIPPRFHHMGVRERVESLHPEPQRLLLSNMASGSAASRSAHCPQSLINNVSSTNLMAGSDASSWSDNINATSISGNSDHHNVKGGSSSLIPNHWLHLPGI* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03046 259 ProSiteProfiles Zinc finger Dof-type profile. 23 77 IPR003851 GO:0003677|GO:0006355
Lapu3g03046 259 Pfam Dof domain, zinc finger 22 77 IPR003851 GO:0003677|GO:0006355
Lapu3g03046 259 MobiDBLite consensus disorder prediction 74 100 - -
Lapu3g03046 259 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 190 IPR045174 GO:0003700|GO:0006355
Lapu3g03046 259 ProSitePatterns Zinc finger Dof-type signature. 25 61 IPR003851 GO:0003677|GO:0006355
Lapu3g03046 259 MobiDBLite consensus disorder prediction 78 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03046 Lapu-Chr3 53652466 53653773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03046 15 109 C2C2-Dof Transcription Factor Family AT5G66940 57.576 3.62e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g03046 zf-Dof 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03046 - - gmx:100814555 302.367