Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03001 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAGGCTCAAGACTTGGAACTCCCAAAGCCTAATCTAATGAGGAAACAACAGCAGCAGCAGCAGCAAACTCAGCCTTCAGAGTCTTTGAAGTGCCCAAGATGTGACTCTACCAACACCAAGTTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGAAATGTTCCAGTAGGTGGTGGAAGGAAGAACAAGAGAGTCAAAAAACCAAACACTCCGACACCATCTTCCACCACTGCCACTACCACCACCACCCCGACCACGGCCACCCCTTCTACTTGCACTGCCACTGTCACAACATCAATTGGCAACATGGATGCTATGTTGGGTAGCAGCCACATGACAATTCAAACTCCTCTTGTAGCTGATCAGAAAAACATGGCCTCCTCTCTCTACCAAGCTCTAATTCGCCCACCACCTTTACTGCTACAACATAATCTGATGAACACGAGAGACTTAGACGGCAAAGATTTTGGTATTGGTATTGGTAATAATGGTATCTTCCCGAGTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCGGTGTCAACCTCTCTGAGATCCTCCAATGTTTATAACTATGGGGAGGAGTTTAAAGCAGTGGAAGAACCAACCATCAACAGCACTGCTATAGTGCCTAGCACAGGTGGAACTAACACACAGCCTTGGGAGATAGCAGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTATTGGAATTGGGAGGACTTTGATTCATTGGTCTCAACCGATCTAAAAGATCCCTGGGATGATTCTGATATCAAACCCTGA 954 0.4612 MGLSSKQVSSSGLDWKQTLLEAQDLELPKPNLMRKQQQQQQQTQPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPNTPTPSSTTATTTTTPTTATPSTCTATVTTSIGNMDAMLGSSHMTIQTPLVADQKNMASSLYQALIRPPPLLLQHNLMNTRDLDGKDFGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSNVYNYGEEFKAVEEPTINSTAIVPSTGGTNTQPWEIAATSGVGLGTSNYWNWEDFDSLVSTDLKDPWDDSDIKP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03001 317 MobiDBLite consensus disorder prediction 87 128 - -
Lapu3g03001 317 MobiDBLite consensus disorder prediction 106 128 - -
Lapu3g03001 317 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Lapu3g03001 317 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Lapu3g03001 317 MobiDBLite consensus disorder prediction 32 51 - -
Lapu3g03001 317 Pfam Dof domain, zinc finger 48 101 IPR003851 GO:0003677|GO:0006355
Lapu3g03001 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 206 IPR045174 GO:0003700|GO:0006355
Lapu3g03001 317 MobiDBLite consensus disorder prediction 26 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03001 Lapu-Chr3 53205298 53207451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03001 49 106 C2C2-Dof Transcription Factor Family AT1G28310 84.746 3.80e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g03001 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03001 - - gmx:100818111 462.611