Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02706 ATGGGTGCGGGGAAAGGGGTTGTTTGGATGGCGAAAGTTATAGCGCTGGTAGCAGCAATCGCGGTGGTGGCGAATGTAGAGGCCCAACCGGAGGCCCAATTCGTGTGCAACAGCGCGAGTAACTCCACGTGTGGGGCCCTCATAGGGTACTCTCACGCGAACGGCACCACCCTGGGCGACATCCAAACCCTCTTCAACGTGAAGAAACTTGTGGACATCCTAGGCGCGAACAACCTCCCAAGCAACACCACAAAGCAGCACGTGGTGGGGCCGAGCGAGGTTGTGAAGGTGCCGTTCCCGTGCAGGTGCCGCAACGGGACGGGACTCTCGGACAGGGTTCCGCTTTATAAGATAAAAAAGGGGGACACGCTGTTCGACATAGCGACGACGACGTTTGGGGGTTTTATGAAGTTTCCGCAGATCCAGAAGGCGAATAATATACCGGACGCGAATAACATCACCACTGGGGACACGCTTTATATTCCTCTGCCGTGTAGCTGCGATACGGTGAGTGGGAACAGGGTGGTGCACTATGCGCACCAGGTGACGCCGCAGAGCACGGTGGAGGGTATTGCTGAGCAGTTTGGCACCACTCAGCAGATCCTCCTCACACTCAATGGCATTTCTGACCCCAAAACGCTTCAGGCCGGTCAGATTCTAGATGTTCCTCTTCGAGCTTGTTCCTCGAGTGTGAAAAATGATTCATTGGACTATCCATTGCTTGTTCCAAATTCTTCTTACGCCTATACTGCCCACGAATGTGTTAAATGCAAGTGTGAGTCCAGCAACAACTACATATTACAATGCGAGCCATCCCAACTCAAACCTACCAACTGGTCCGTTTGTCCTCCTACCCAATGCTCAAGCAACGTCTTCATTGGCAACAGCACCACTTCCCTTACAGATTCCTGCAATCGCACAATCTGTGCCTATACTGGTTATACATTCCAGAATATCTCTGCAGAACTTGTAACGCAGAACACTTGTGCTGTGTCACCGAGTCCTTCAGGAGGATCTAGTGGTTCTGGTTCAGGAGCGCCAAGGAGCACTTTGCAAGGCCTGCTTTGGAGTAATATTTTCGTTGTTGTTCACTTTGTCCTCTTCCTTGTCTATGTTTTGTAG 1122 0.5169 MGAGKGVVWMAKVIALVAAIAVVANVEAQPEAQFVCNSASNSTCGALIGYSHANGTTLGDIQTLFNVKKLVDILGANNLPSNTTKQHVVGPSEVVKVPFPCRCRNGTGLSDRVPLYKIKKGDTLFDIATTTFGGFMKFPQIQKANNIPDANNITTGDTLYIPLPCSCDTVSGNRVVHYAHQVTPQSTVEGIAEQFGTTQQILLTLNGISDPKTLQAGQILDVPLRACSSSVKNDSLDYPLLVPNSSYAYTAHECVKCKCESSNNYILQCEPSQLKPTNWSVCPPTQCSSNVFIGNSTTSLTDSCNRTICAYTGYTFQNISAELVTQNTCAVSPSPSGGSSGSGSGAPRSTLQGLLWSNIFVVVHFVLFLVYVL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02706 373 SUPERFAMILY LysM domain 115 163 IPR036779 -
Lapu3g02706 373 SUPERFAMILY LysM domain 178 223 IPR036779 -
Lapu3g02706 373 CDD LysM 180 222 IPR018392 -
Lapu3g02706 373 Pfam LysM domain 116 162 IPR018392 -
Lapu3g02706 373 Pfam LysM domain 180 223 IPR018392 -
Lapu3g02706 373 Gene3D LysM domain 115 168 IPR036779 -
Lapu3g02706 373 CDD LysM 116 161 IPR018392 -
Lapu3g02706 373 ProSiteProfiles LysM domain profile. 178 222 IPR018392 -
Lapu3g02706 373 Gene3D LysM domain 169 235 IPR036779 -
Lapu3g02706 373 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 332 - -
Lapu3g02706 373 SMART LysM_2 115 162 IPR018392 -
Lapu3g02706 373 SMART LysM_2 179 223 IPR018392 -
Lapu3g02706 373 ProSiteProfiles LysM domain profile. 114 161 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02706 Lapu-Chr3 49673872 49677706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02706 13 319 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 48.065 6.02e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02706 - - gmx:100804190 540.421