Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02667 ATGTTAGACAACAGTGCTTCTTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGTTGGCTAACAAAAGGAAAAGGAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCCACCACCTTGCTGGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGAAGGCACAAGGTGCCATGGAAATTGCTCAAGAGGGAAACACAAGGGCAGAAAAAGAGGGTATTTGTGTGTCCAGAGCCAAGCTGTTTGCACCATGACCCTTGCCATGCCCTTGGCGATCTTGTGGGCATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCATAAGCAGTGGGTCTGTGACAAGTGCTCCAAGGGGTATGCTGTTCAATCCGATTACAAGGCACACATCAAAACTTGCGGCACCCGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGGCCAGAGCTGCAAGCACTGCAACCTGCATGCTCCTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAACTTTTAGCATAGCCCCACCATTGCAAGGACTTCCACTGCCAAAGCCAGCTTCTGCTGATCAACCAGCAACAGTGTTATTAACTTCAGAGATACACAATAACAAGTCCACCACCTCTCGTAACTTAGAACTTCAGCTATTACCCTCCTCGATTAATTCTCAAGAAAAACGAAATCCGAAGGAAAACTATGGTTTGAAACTTTCAATAGGCTCATGTAGTAATGACAAAGGGAATGAAGAGAGAGTATGTTCGGAAGCACATAGGAGCCCACCTGAAAGGAATGTGGGTGACTATTCCACACTGGAAGTGGCGAGGTTGAAAGAGTTTGCAGCTGAAGAACTCAAGTTGGCCATGGCAGAAAAGGTTTACGCAGAAGAGGCAAGGAAAGAGGCCAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAAAATGCCAAAAGGATAAGGAAACAAGCACAATCAGAACTTGCAAAGGCTGAAGAGTTGAGAAAGCAAGCCATCAAGAAAATAAGCTCCACTGTTTTGGAAATAACATGCCAAAGTTGCAAGCAACAGTTCCAGTCTACAACTCTCGGGGTTCCATCAGAAGAGACCTCCACTGTGATGAGTTACATGTCTTCAGCAACCACAGAAGGAGAAGCAGAATGA 1284 0.4727 MLDNSASSGAPSSSDAAFALSENGLANKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEATFSIAPPLQGLPLPKPASADQPATVLLTSEIHNNKSTTSRNLELQLLPSSINSQEKRNPKENYGLKLSIGSCSNDKGNEERVCSEAHRSPPERNVGDYSTLEVARLKEFAAEELKLAMAEKVYAEEARKEAKRQIEIAELEFENAKRIRKQAQSELAKAEELRKQAIKKISSTVLEITCQSCKQQFQSTTLGVPSEETSTVMSYMSSATTEGEAE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02667 427 MobiDBLite consensus disorder prediction 196 216 - -
Lapu3g02667 427 MobiDBLite consensus disorder prediction 1 20 - -
Lapu3g02667 427 MobiDBLite consensus disorder prediction 196 231 - -
Lapu3g02667 427 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Lapu3g02667 427 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Lapu3g02667 427 Gene3D Classic Zinc Finger 35 100 - -
Lapu3g02667 427 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 395 IPR031140 -
Lapu3g02667 427 MobiDBLite consensus disorder prediction 404 427 - -
Lapu3g02667 427 SMART c2h2final6 98 128 IPR013087 -
Lapu3g02667 427 SMART c2h2final6 134 161 IPR013087 -
Lapu3g02667 427 SMART c2h2final6 57 79 IPR013087 -
Lapu3g02667 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lapu3g02667 427 Gene3D Classic Zinc Finger 119 196 - -
Lapu3g02667 427 FunFam protein indeterminate-domain 12-like 36 104 - -
Lapu3g02667 427 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Lapu3g02667 427 MobiDBLite consensus disorder prediction 1 45 - -
Lapu3g02667 427 Coils Coil 326 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02667 Lapu-Chr3 49245575 49249082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02667 22 427 C2H2 Transcription Factor Family AT2G01940 54.831 6.63e-154 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g02667 zf-C2H2 0.004 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02667 3 49245575 49249082 Lapu3g02667 3 49245575 49249082 ECH