Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02533 ATGTCTGATTCATTTGCTAGTACCTTTCACTCTTCCCCTCCAAACATCATCCACAATTCCCATGCAACCCCCAAAATCACCACCTTATGCTCGATAGCCCAACCTTATTGTATTTGCACTCACTGTAACCACATCCTCGCCTTTAACCACCATGTTGGTAATGCAGCAGAGGAAGGGACAAATAACACAGGGTCCCATGTCCAGTCCCAGCAAAGCACAAGGTGGAGTCCAACGCCAGTTCAGTTGCTAGTCCTTGAGGAATTGTATAGGCAAGGCACTAAAACACCATCAGCTGAACAAATTCAACAAATAGCTTCACAGTTGCGTCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGAGAGAGACAGAAGAGGCGCCGCAGGGAGATGGAGGAAAATAATGCTGCTTCTTCCAGTGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTCGACATGCAGAGGAATCTGCTGCACTGGATATAGCAGAAAAGGGCTCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCATACAAGTTTTGAGGAAAAACATAGCAGAAAGGAAGTTGCAATTGCAAGATAATATGGAAATGCCTTGTTTCCCTCCCACGACTATGGCAGCGCTAGCAACTTCACACACAACACTTAACACACAACTTTTAATCCCTCAAAGTTATAACAGAGAAATTTTAAACTACTATGAAGGAGAAAATGCAGATCCTCGAACCCTCGACCTATTTCCACAAAAGAGGGACGACCAAGATGGCATTTGTCTTGCTGAGAGGAAATCTATGTTCTGTGCCAGTGCTTCTATGGACAATGACATCACCTCCAGCCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 930 0.4462 MSDSFASTFHSSPPNIIHNSHATPKITTLCSIAQPYCICTHCNHILAFNHHVGNAAEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSRHAEESAALDIAEKGSNGWTQFEERGIQVLRKNIAERKLQLQDNMEMPCFPPTTMAALATSHTTLNTQLLIPQSYNREILNYYEGENADPRTLDLFPQKRDDQDGICLAERKSMFCASASMDNDITSSQFFEFLPLRN* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02533 309 Coils Coil 129 149 - -
Lapu3g02533 309 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Lapu3g02533 309 Pfam Homeodomain 72 132 IPR001356 GO:0003677
Lapu3g02533 309 SUPERFAMILY Homeodomain-like 66 136 IPR009057 -
Lapu3g02533 309 CDD homeodomain 73 128 IPR001356 GO:0003677
Lapu3g02533 309 Gene3D - 56 147 - -
Lapu3g02533 309 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 56 303 IPR044555 GO:0003700|GO:0099402
Lapu3g02533 309 SMART HOX_1 70 137 IPR001356 GO:0003677
Lapu3g02533 309 MobiDBLite consensus disorder prediction 130 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02533 Lapu-Chr3 47455294 47457238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02533 61 309 Wox Gene Family AT3G18010 32.787 2.45e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lapu3g02533 Homeodomain 3.7e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02533 3 47455294 47457238 Lapu3g02533 3 47455294 47457238 ECH