Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02525 ATGGATGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAACAACAGCCTTCAACTTCTTCGTCTTCGTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATTCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTACTGTTGGCATTGGTGGTCCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGGGAATTACCGTCATGGGGTTGATGAAGGGAATGATGTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAAGGATACATTAATCCCCAAGTTTGACTATCAGAAAAAGAAGCGTGTTGGCTATAAAGCAATAAAGAGCGCTTCATCTGGAGTGGTAATAGTTGACGGCACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGACATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGTTTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCACTGTTTCGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTACAGATGGACATTCAGGTTCTGCTTTTCAAGGAAACGAAGCCCAAACAGACAATTTTATCGAAATGTACCTTAGACCACCTTCATCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCTCTTGGTGACCAGAGGATTGTTGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGGATGACGTTGGGTGGGTTGTTGGCTCTTGGGTACACCGTTGTGGTTAGTTATAAGCGTGCATCCACAACTGTCAACAATGGCAACATTACCATGTCTTTTGAGACCATTGATGTTCTTGGTGAGACATTCATGGTAATGAGAGGAACTGATAGAAAGACTGTTGGAACAGAAGCATCAAGGATGGGTATCGATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTGGAGAGAAAAGGTGTACCTCGTCTTAGTACACCACCTCTTGTGCCTAATACAACTGTGTCTGGTAGTCAAGAAACAGCAATCATTGCACCAAAGCCAATTCGTGTCACTCCTAATGTTGTTACTGGGCTTGAAGATTTACCTCAGCCATGGACTCGATCCCCAACAAAATCTAAAATGGAGCCTGTTGTGGCTGCATGGCATTTCATATCTTCAGATTCCTCCCGGCCCGACAATTCAACCACAGATCCTTCATCTTTCAGGGATAGTATTAGGCTTGCTCCAATGCCTGATTCGTTTGACTTGGACAGGGGATTGCTTTTGGCTGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTTCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGGAAGACTAGTTTGGCTCATAAAATGGCAAATATAATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCGCACTTGATTTATCTTTGTTATCGAAGAACATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAATGGTTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTTTGCTTTGCATCCTGATATCCGAATATCACTTGATTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGCTTTATTTCTCAAAATGAGATCATGATGACAGTGTTTCCCATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGATTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTATTTGTATTAAAGAGTAACAAAATAGTAGCATATCAAGATATTGTTGCAATTCTTGATTCAGCAAAATTTTGCAGTTCGGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCTTCTAATGGACATTTGAGAGACAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGAGAGCCCATCAAAGAAGGGAACTTTATCATTCAGCCCAAAGTGGATTTTGATATTAGCATTAGTACGGTTGCTGGCCTTCTTAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCACCTACAAGATGTACCTGGCCCATACATTCAGATAAAGGGTGTTAATAAAGATGCAGTTGCAGCGGCTGGTTCAATGCTTAAATTGGATACTTCATATACGACAAAGAGTTATCTTGAAATAATTTCGGAAAGACTACCGGCGATTGAAAGAACTTCTGGTGGGATTCATTCTCAACAATCAGCAAGGCTGCTAGAGATTGTTGAATTTATTCAATCTCAGGGAAGTAGCTCTGCTTCAGAATCCTCATCAGGTAGGGTAGTCTCTCCAATTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTAGCGATAAATACGGTTCTATGGACATTTTTTATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATAA 2859 0.4001 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMGNYRHGVDEGNDVDSIDFDTLIKNLEDLTKGKDTLIPKFDYQKKKRVGYKAIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESTDGHSGSAFQGNEAQTDNFIEMYLRPPSSSEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVNNGNITMSFETIDVLGETFMVMRGTDRKTVGTEASRMGIDGPWITKSYLEMILERKGVPRLSTPPLVPNTTVSGSQETAIIAPKPIRVTPNVVTGLEDLPQPWTRSPTKSKMEPVVAAWHFISSDSSRPDNSTTDPSSFRDSIRLAPMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGARNGFKELEVSEDCGVIIFEGVFALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKIVAYQDIVAILDSAKFCSSVQKFIDIYIRLPGIPSNGHLRDSDCIRVRICEGRFALLIREPIKEGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVAAAGSMLKLDTSYTTKSYLEIISERLPAIERTSGGIHSQQSARLLEIVEFIQSQGSSSASESSSGRVVSPIEGIIEEMQSRIRRLERWLAINTVLWTFFMSALVGYSLYQRRRQ* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02525 952 PANTHER URIDINE KINASE 10 262 - -
Lapu3g02525 952 Gene3D - 516 693 IPR027417 -
Lapu3g02525 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Lapu3g02525 952 Gene3D - 703 864 - -
Lapu3g02525 952 SUPERFAMILY CYTH-like phosphatases 711 859 IPR033469 -
Lapu3g02525 952 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Lapu3g02525 952 Pfam Phosphoribulokinase / Uridine kinase family 106 223 IPR006083 GO:0005524|GO:0016301
Lapu3g02525 952 SMART AAA_5 516 660 IPR003593 GO:0016887
Lapu3g02525 952 SMART AAA_5 61 211 IPR003593 GO:0016887
Lapu3g02525 952 PRINTS Uridine kinase signature 517 534 - -
Lapu3g02525 952 PRINTS Uridine kinase signature 638 648 - -
Lapu3g02525 952 PRINTS Uridine kinase signature 544 555 - -
Lapu3g02525 952 CDD UMPK_like 64 226 - -
Lapu3g02525 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 687 IPR027417 -
Lapu3g02525 952 Gene3D - 63 243 IPR027417 -
Lapu3g02525 952 CDD UMPK_like 519 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02525 Lapu-Chr3 47316171 47339765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02525 512 675 PRT Gene Family AT1G55810 27.528 5.07e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02525 3 47316171 47339765 Lapu3g02525 3 47316171 47339765 ECH
Lapu3g02525 3 47316171 47339765 Lapu3g00937 3 10072941 10085688 PCT