Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02317 ATGGAAAGAGGCAGAGGCAAAGGCACTTACCGTGGCCGTGACGGCAATGCTGGCCGTCACAGTTATGGTGGCCGATACAGCAATGCTGGCCGATACAGCAATGCTGGCCGTAGAGGAAGGTTTTACCAACGTCCCGAGTTAATTAGTGGCAACGAACAAGGGTCTCCTTCCCAACCACAACCACAACCACAAACACGGTGGCAACCAAGGTCAAACTCTTCTTCCCCTGTTGAATCTTCAGAACCTTACGGTTCTCAACCTCAAGCTGATACTGAAACTGAAAAACAGAGTATTCAAAATCCAGACGTTGGATCTTTGAGGATATCAGAGGAGAAAGCAGAGAATATCAGACCAATACGTAGGCCAGACAAAGGGGGAACAATGGCAGCGCACATAAACGCGCTTGAGGTGAACCATTTCCGTGTTGAGTTCGATGCAACGAGAGTAATATTCCACTACGACGTGGAGGTGAAGGCCAAGGCTCCGCCCGTGAACAATCGGCCTCAGAAGATTTCCAAGTTTTGTCTGTCGTTGATTCGGGATAAGCTGTTTTCTGATCACGCGTTCCCGAGTTCGGCGTACGACGGCGAGAAGAACATGTTCAGCGCGGAGCGGTTGACGGAAGGAACCTTCGATGTGGACGTGGTCAGAGGTGGGGACACAGGGATCGTTTCCTATTCAGTCACTCTTAAACTTGTGAAGGTGCTTGAACTCCGGAAGTTGAGAGATTACTTGAGTGGAAAGGTTCTTTCGATTCCTAGAGATGTTTTACAGGGCTTGGACTTGGTGGCGAAGGAGAATCCCGCGAAGCAGTGTGATACGGTTGGGTGCTGCTTCTTCCCCAAAGACCATCCCATAAGTCCGAGAGACTCTAAAGGGATAATTGCAACTGGAGGGTTTCAGCAGAGTCTTAAGCCCACTTCTCAAGGCTTGTCCTTGTGCCTTGACTATTCCGTTTTCTCGTATTTTGGGGAGGACAAACCGGTGTTGGAGTTTTTGCATGAACAGATTGAGAACTTCGATTTGCTGAAGTTTCCCAAGTTCAAGAAAAAAGTTGAGGATTTACTTGTGGGGTTGAAAGTTAATGTGACCCACCGGAGGACGAAGCAGAAATACACTATTACAAGGTTGACACCCATGCTTACGAGCAAGATCAGATTCCCTGTTTTTGACAATGAGGGACGGAATCCAGCACGGGAATGTAGTCTGATCGATTACTTTTCCGGGAAGCACAAGGTGAACATTCAACACAGGGACATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTGCCTATGGAGTTGTGTGTCTTGGTTAAGGATCAAAGATGCCCCAAAGAGAACTTATTGAACACCTACGCTGGCAATGTGTTGAGAACCATGTCACTGGCTCCTGCAGGAGAGAGGCGAAATAAAATAAGCACTATAGTGAAATCAAATGAAGGACCGTGTGGAGGAGGTGTTATTGAAAGTTTTGGAATGCGTGTGCAAACTTCCATGACAAAAGTGACTGGACGAGTAATTCAGCCCCCAGAACTGAAGATAGCTAATCGAAGTGGTGGGATTATAAGTATGGCACTGGAAGTGGGGAAACCTCAGTGGAGTCTGAAGGAAGGATCAATGGTGGAAGGCAAGCCGCTCAAGTGTTGGGGCATTCTTTATTTTTCTGATTCCAAGTGCCAATTTAAAAGCGAACAGTTCGTTAAAAAACTTCGTTGGAAGTGCGGATTACTCGGTATTGGAATGGAGAAGCCATCTTGGTCTGAAGAATTTTCTATCTTGACTCTTCGCAAATACGATTCGCTGTGGGAACTACTTAAAGAAATTGATTGTCAGGTTCGTCAGAAATGTGGACAACGACTGCAGATTCTTCTTTGTGTGATGGCCGAGAAAGATCCAGGTTACAAGTGCCTCAAATGGATTGCTGAGACTAAGGTTGGGGTAGTGACACAATGCTGCTTGCGTTCTCACGCCAATGATGGGAAGGACCACTTTCTTACAAACCTTGCCCTCAAGATGAATGCCAAACTTGGAGGAAGTAATGTGGAGCTCATGAATAGGCTCCCAAACTTTGACGGCGAAGGCCATGTTATGTTCATAGGGGCTGATGTTAATCATCCAGGTTGTCGGGACACCAACAGTCCGTCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAAGGTCATCGGGTTGAGAAAATTTTGAATTTTGGAAGAATTTGCCTGGAACTAGTTTCATATTACAATAGGCTGAACAAAGTGTGGCCAGAGAAAATTGTTATCTTTCGAGATGGAGTGAGCGAAAGTCAATTTCACATGGTTCTCACGGAAGAGTTACAAGATTTGAAATCAGTGTTTCGTGATTCAAATCACTCGCCAACCATCACTCTTATTGTTGCACAAAAGCGACACCAAACTCGATTTTTTGTGAAGGATCGAAATTTCAATGTGTTACCTGGAACAGTCGTGGACACAACAGTGGTACATCCTTTTGAATTTGACTTTTACCTTTTCAGTCACAAGGGAATTTCGGGTACAAGCAAGCCCACTCACTATCATGTGTTATGGGATGAGCACAAATTCACATCTGATGATTTGCAGAAACTGATATACGAAATGTGCTTTACCTTTGCAAAGTGCACTGGACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGATCTAGCTGCATATAGAGGCCGGTTGTACTGTGAAGCAATGCATGAAACAAAATCTGCTCGCGCTGCTGCTCCTGCATCTTCTTCGTCACTTTCTAGTTTAAATGATCAAGGGTGTTACAAGTTGCACCCCGATGTGGAAAACCTAATGTTCTTCATCTGA 2883 0.4554 MERGRGKGTYRGRDGNAGRHSYGGRYSNAGRYSNAGRRGRFYQRPELISGNEQGSPSQPQPQPQTRWQPRSNSSSPVESSEPYGSQPQADTETEKQSIQNPDVGSLRISEEKAENIRPIRRPDKGGTMAAHINALEVNHFRVEFDATRVIFHYDVEVKAKAPPVNNRPQKISKFCLSLIRDKLFSDHAFPSSAYDGEKNMFSAERLTEGTFDVDVVRGGDTGIVSYSVTLKLVKVLELRKLRDYLSGKVLSIPRDVLQGLDLVAKENPAKQCDTVGCCFFPKDHPISPRDSKGIIATGGFQQSLKPTSQGLSLCLDYSVFSYFGEDKPVLEFLHEQIENFDLLKFPKFKKKVEDLLVGLKVNVTHRRTKQKYTITRLTPMLTSKIRFPVFDNEGRNPARECSLIDYFSGKHKVNIQHRDIPALDFGGNKMNYVPMELCVLVKDQRCPKENLLNTYAGNVLRTMSLAPAGERRNKISTIVKSNEGPCGGGVIESFGMRVQTSMTKVTGRVIQPPELKIANRSGGIISMALEVGKPQWSLKEGSMVEGKPLKCWGILYFSDSKCQFKSEQFVKKLRWKCGLLGIGMEKPSWSEEFSILTLRKYDSLWELLKEIDCQVRQKCGQRLQILLCVMAEKDPGYKCLKWIAETKVGVVTQCCLRSHANDGKDHFLTNLALKMNAKLGGSNVELMNRLPNFDGEGHVMFIGADVNHPGCRDTNSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRICLELVSYYNRLNKVWPEKIVIFRDGVSESQFHMVLTEELQDLKSVFRDSNHSPTITLIVAQKRHQTRFFVKDRNFNVLPGTVVDTTVVHPFEFDFYLFSHKGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRLYCEAMHETKSARAAAPASSSSLSSLNDQGCYKLHPDVENLMFFI* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02317 960 CDD PAZ_argonaute_like 328 441 - -
Lapu3g02317 960 Pfam N-terminal domain of argonaute 135 263 IPR032474 -
Lapu3g02317 960 Pfam Argonaute linker 2 domain 470 516 IPR032472 -
Lapu3g02317 960 ProSiteProfiles PAZ domain profile. 358 442 IPR003100 GO:0005515
Lapu3g02317 960 Gene3D - 509 687 - -
Lapu3g02317 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 134 924 - -
Lapu3g02317 960 Gene3D paz domain 321 447 - -
Lapu3g02317 960 SUPERFAMILY PAZ domain 322 481 IPR036085 GO:0005515
Lapu3g02317 960 ProSiteProfiles Piwi domain profile. 625 911 IPR003165 GO:0003676
Lapu3g02317 960 Pfam PAZ domain 336 451 IPR003100 GO:0005515
Lapu3g02317 960 Gene3D - 695 960 IPR036397 GO:0003676
Lapu3g02317 960 SMART DUF1785_2 273 325 IPR014811 -
Lapu3g02317 960 Pfam Argonaute linker 1 domain 275 318 IPR014811 -
Lapu3g02317 960 MobiDBLite consensus disorder prediction 48 104 - -
Lapu3g02317 960 CDD Piwi_ago-like 490 917 IPR045246 -
Lapu3g02317 960 MobiDBLite consensus disorder prediction 107 121 - -
Lapu3g02317 960 SMART Piwi_a_2 625 919 IPR003165 GO:0003676
Lapu3g02317 960 MobiDBLite consensus disorder prediction 1 124 - -
Lapu3g02317 960 Pfam Piwi domain 626 915 IPR003165 GO:0003676
Lapu3g02317 960 SUPERFAMILY Ribonuclease H-like 615 920 IPR012337 -
Lapu3g02317 960 SMART PAZ_2_a_3 327 459 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02317 Lapu-Chr3 44456443 44460230 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02317 3 44456443 44460230 Lapu3g02317 3 44456443 44460230 ECH