Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02288 ATGGTGAAGATTTGTTGCATTGGAGCTGGATATGTTGGAGGACCCACCATGGCAGTGATTGCATTCAAGTGTCCTAAGGTTGTGGTAACTGTGGTGGATATATCTTCCCAGCGAATCAATGGGTGGAACAGCGATCACCTTCCCATCTATGAGCCAGGACTTGATGATGTGGTGAAGCAGTGCAGGGGGAAGAATCTGTTTTTCAGCACTGAAGTGGAGAAACATGTTGCAGAGGCTGATATAGTGTTTGTCTCAGTGAACACCCCAACAAAAACTCATGGTCTTGGAGCTGGCAAAGCAGCTGATTTGACATACTGGGAGAGTGCTGCTAGGATGATTGCTGATGTTTCAAAATCAAACAAAATTGTGGTTGAAAAATCCACAGTCCCTGTGAAGACAGCAGAGGCAATTGAGAGGATCCTGACTCATAACAACAAAGGCATCAATTTCACCATTCTCTCAAACCCAGAATTTCTTGCTGAGGGTACAGCCATTGAAGACCTATTCCATCCAGATAGAGTCCTCATTGGAGGGAGGGAGACCCCTGAGGGGCAAAAGGCCATAGAAACTCTCAAAGAAGTGTATGCAAATTGGGTTCCTGTGGAGAAAATCCTCTGCACCAATTTGTGGTCTGCTGAGCTCTCAAAGCTTGCTGCCAATGCCTTTCTGGCCCAGAGAATCTCTTCTGTCAATGCCATGTCAGCACTCTGTGAGGCAACTGGTGCTGATGTGACACAGGTGTCCCACTCAATTGGGACAGACTCAAGGATTGGACCAAAGTTCCTGAATGCCAGTGTTGGCTTTGGTGGCTCATGCTTTCAGAAGGACATATTGAACTTGGTGTATATCTGTGAGTGTAATGGTCTTCCTGAGGTGGCCAATTACTGGAAACAAGTCATTAAGGTGAATGACTATCAAAAAACAAGGTTTGTGAACTGTGTGGTGTCCTCAATGTTCAACACAATTTCTGCCAAGAAGATTGCTGTTCTTGGTTTTGCTTTCAAGAAGGACACAGGTGACACTAGGGAAACACCAGCCATTGATGTGTGCAAGGGGCTATTGGGAGACAAGGCTAAGTTGAGTATATATGATCCTCAGGTCACTGAAGACCAAATCACAAAGGACCTTTCAATGAGGAAGTTTGATAAGGACCACCCTGCTCATCTTCAACCACCAAGCCCCACTTCCATAAAGCAAGTATCTGTGGTTTGGGATGCTTATGAGGCAGTGAAGGATGCACATGGTGTTTGCATTATGACTGAGTGGGATGAGTTCAAGAAACTTGATTACCAGAAAGTTTATGACAGCATGCAGAAGCCAGCATTTATATTTGATGGCAGGAATGTTGTGGATGTTAAAAAGGTCAGGGAAATTGGGTTTATAGTTTACTCCATTGGCAAGCCACTAGATCCATGGCTCAAGGACATGCCTGCAGTGGTGGCTTAA 1446 0.4516 MVKICCIGAGYVGGPTMAVIAFKCPKVVVTVVDISSQRINGWNSDHLPIYEPGLDDVVKQCRGKNLFFSTEVEKHVAEADIVFVSVNTPTKTHGLGAGKAADLTYWESAARMIADVSKSNKIVVEKSTVPVKTAEAIERILTHNNKGINFTILSNPEFLAEGTAIEDLFHPDRVLIGGRETPEGQKAIETLKEVYANWVPVEKILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHSIGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNCVVSSMFNTISAKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQITKDLSMRKFDKDHPAHLQPPSPTSIKQVSVVWDAYEAVKDAHGVCIMTEWDEFKKLDYQKVYDSMQKPAFIFDGRNVVDVKKVREIGFIVYSIGKPLDPWLKDMPAVVA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02288 481 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Lapu3g02288 481 FunFam UDP-glucose 6-dehydrogenase 241 478 - -
Lapu3g02288 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Lapu3g02288 481 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 478 IPR028356 GO:0003979
Lapu3g02288 481 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Lapu3g02288 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Lapu3g02288 481 Gene3D - 241 477 - -
Lapu3g02288 481 FunFam UDP-glucose 6-dehydrogenase 1 208 - -
Lapu3g02288 481 Gene3D - 1 208 - -
Lapu3g02288 481 Gene3D - 209 240 - -
Lapu3g02288 481 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Lapu3g02288 481 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Lapu3g02288 481 PIRSF UDPglc_DH_euk 1 479 IPR028356 GO:0003979
Lapu3g02288 481 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 317 463 IPR036220 -
Lapu3g02288 481 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Lapu3g02288 481 NCBIfam nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Lapu3g02288 481 FunFam UDP-glucose 6-dehydrogenase 209 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02288 Lapu-Chr3 44061081 44062526 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02288 3 44061081 44062526 Lapu3g02288 3 44061081 44062526 ECH
Lapu3g02288 3 44061081 44062526 Lapu1g01292 1 25700557 25703452 ECH
Lapu3g02288 3 44061081 44062526 Lapu2g01300 2 23727689 23730359 PCT