Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02251 ATGTCAGAGGTTAAAGACTCTGCGATAAAGCTCTTTGGAAGGACAATTTCCCTGCCACACAATGATTCTTCTGCGCCTGCGCCTGCGCCTCTCGCTCGTCCTTCATCTTCCTCTTCTCCCTCTGCAACACAACAACACCAAGACGACGAGGAACCTCTGAGGAAAGAACTTACCTCACTTCAAGATGATGATGCCTCATCACATCAAACCACTGAGGATTTAAAATCTCCCACAACATCTTCAGACATACTTGAGAATTCTAAGACTCCCTCAGGGGAAACAGAGACATCACTGCAGAAATCCCCTGCAAACGGAGAACAAAGCGAGACTTCTGAAGAACAACCACCAAAGAAACCTGACAAGGTACTTCCATGTCCGCGGTGCAATAGTATGGACACCAAATTCTGCTACTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCTGGAGGAACAATGAGGAATGTGCCTGTGGGGGCTGGTCGCAGAAAAAACAAGAACACTTCCCCGGGGGCTGCAGCACATTACCGACAGATAATGATCCCGGAGGCACTCCAAGGAGCTACACTCAATGCCTCCAATGGATTGCATAATGCCCTTTTGGGGAATGGACCAGCTGTGTTGACTTTTGGTGCTGATTCCCCTCTCTGTGATACCATGGCTTCTGTGTTGAACATTGCTGAGAGAGCTCAAAGTTGTGTAACAAATGGGTTTCATGCGACTGAGCCAAATAGTTCTGTTTCCTATTGTAAGGAGGGTGATAGGGGTGGTCATTCTACTGGAGTTTCTATTTCATCAACTTTAACTTCCAGCCATACTAGCTCACATGAATCAGTTGATAAAAGAGTTGAAGGTTTCACTCCTCAATTATCATACTTTCCAAGTACCCCTTGGCCTTATCCTATGCCTCCTCCTACATTTTGCCCTCCAGGCTACCCTTTATCTTTCTATACTACACCAGCATATTGGGGTTGTATGCCACCCTCTTGGAATATGTCATGTATCTCACCCCAATCTTCTGTTAGCAACTCTGTCTCTGCCCCCATTTTAGGGAAACACTCAAGGAATGGGAACATCATCACCCCATCAAATTCACAGAAAGAAATGCGTGATGTAGAACATAACAGTTCAGAACACAATTTCTTCCCCAAGACTCTTAGAATTGACGACCCTAGTGAAACTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAGGAATGACAAGGCCAGTTCTGGAGGCCTTTTCAAAGCTTTTCCATCCAAGGGAAATGACATGAATCACATGGTTGAAGCATCACCGGTGTTGCAAGCCAACCCTGCAGCTCTATCGCGTTCTCTAACCTTCCATGAACGGACCTGA 1392 0.4591 MSEVKDSAIKLFGRTISLPHNDSSAPAPAPLARPSSSSSPSATQQHQDDEEPLRKELTSLQDDDASSHQTTEDLKSPTTSSDILENSKTPSGETETSLQKSPANGEQSETSEEQPPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSPGAAAHYRQIMIPEALQGATLNASNGLHNALLGNGPAVLTFGADSPLCDTMASVLNIAERAQSCVTNGFHATEPNSSVSYCKEGDRGGHSTGVSISSTLTSSHTSSHESVDKRVEGFTPQLSYFPSTPWPYPMPPPTFCPPGYPLSFYTTPAYWGCMPPSWNMSCISPQSSVSNSVSAPILGKHSRNGNIITPSNSQKEMRDVEHNSSEHNFFPKTLRIDDPSETAKSSMWSKLGTRNDKASSGGLFKAFPSKGNDMNHMVEASPVLQANPAALSRSLTFHERT* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02251 463 PANTHER CYCLIC DOF FACTOR 2 1 463 IPR045174 GO:0003700|GO:0006355
Lapu3g02251 463 ProSiteProfiles Zinc finger Dof-type profile. 123 177 IPR003851 GO:0003677|GO:0006355
Lapu3g02251 463 MobiDBLite consensus disorder prediction 15 125 - -
Lapu3g02251 463 ProSitePatterns Zinc finger Dof-type signature. 125 161 IPR003851 GO:0003677|GO:0006355
Lapu3g02251 463 MobiDBLite consensus disorder prediction 270 290 - -
Lapu3g02251 463 MobiDBLite consensus disorder prediction 270 284 - -
Lapu3g02251 463 MobiDBLite consensus disorder prediction 47 70 - -
Lapu3g02251 463 Pfam Dof domain, zinc finger 120 177 IPR003851 GO:0003677|GO:0006355
Lapu3g02251 463 MobiDBLite consensus disorder prediction 71 110 - -
Lapu3g02251 463 MobiDBLite consensus disorder prediction 30 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02251 Lapu-Chr3 43541628 43545355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02251 4 461 C2C2-Dof Transcription Factor Family AT5G39660 40.486 3.00e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g02251 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02251 - - gmx:100813315 670.233