Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02126 ATGTCCCAAGTTAGAGATTCTGCAATAAAGCTTTTTGGAGCTGATATTCATAATATCCATATTCCCATTAAGCCAACCACTCCCTTCACAGATTTACACTCTTTGACTCAGATTCAGCCTCTGCCTCAACCCATCATCATCATGAATGGACTTGAAGAATCAACTAATGATGAAGTGGATGTTCCTCTAAATGAAGAAGTTTCTAGCGAACAAACTGATCCTCAAGAAGATGGTAATGGTACTCCAAGAAACATATGTAAAAATCCTGCTCTGAAACTGGTGGCCAAAGTAGTTCATAGGACTAATGAGAACAGGAATGCTAAAAGAAATATTGATCAAGAAAAAGTTTTCAAGAAGCCAGACAAGGTCCTCCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGAGGGGCGATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGCAAGAATAAGCACTCAGCTCTGCAGTATTGTCAGAAACCTGTGACTCCTGATGGTGCATCTGCGATCCAGACACATTCCAGTGCTTCTGGTGATGACATGATTCTCTCATCTAATGAACTTTCTGTGACTTCAAGACCTATCAAAGAAAGGGAGGAAACTCCTCTTAGTGAATCCTTAGAAACTGTGTTGAGTCTCAATGGCCAAAGAAAATTTGATGTGGACTTTTCCACTATCAAAGATGATGGTGAGGACCCTTCCAGCTCTTCTATGAGATCTAATGAAATAGAGCAGGTTGGTTTGGTACAACACTCTAATGGTTTAATTCCCTTACATTCATTTCATTATCATCCTGTCCCTGCATGGTCTTATCAATGGAATCCATTTTGGAATGCCAAGGAGTGTAGGTCCAGTAGCACTAGTTCTAGACCTCCTTACACAGGTTCTCCAACCATGATGGCAGTTTCTGACTTCTCCATACCAACGGTAATACTACCTGCGTCACCTTGTTCGTATTCAGGTTTCATGTCAAGCTTAGCTGCCCAGAAGGAAGAGTCTTCATTGATTGGATCTGCATTTAGGGGCATATCATTGTCTTCATCTTCAGTTAACAACACTACTAGTTCTACGTTGGGAAAACATTCTAGAGATGGAAGTACACTGAAGGAAGCTGCAATGAAACAGAATCTTTGGGTGCCTAAGACAGTTAGAATTAACGGCCCAGAAGAGGCTGCAAACAGTTCTATATGGACAACTTTGGGAACAAAATCTGAACATAACAAAATCATTATAAAAGGAAGTGTCTTTAAATCATTTGAATCTAAGACAAGTGCTGATGATAATCGAATTCGAAGGACAAACCCTGCTGCTTTCTCTCGCTCTGAATCTTTTCAGGAAAGCATGTGA 1425 0.4035 MSQVRDSAIKLFGADIHNIHIPIKPTTPFTDLHSLTQIQPLPQPIIIMNGLEESTNDEVDVPLNEEVSSEQTDPQEDGNGTPRNICKNPALKLVAKVVHRTNENRNAKRNIDQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHSALQYCQKPVTPDGASAIQTHSSASGDDMILSSNELSVTSRPIKEREETPLSESLETVLSLNGQRKFDVDFSTIKDDGEDPSSSSMRSNEIEQVGLVQHSNGLIPLHSFHYHPVPAWSYQWNPFWNAKECRSSSTSSRPPYTGSPTMMAVSDFSIPTVILPASPCSYSGFMSSLAAQKEESSLIGSAFRGISLSSSSVNNTTSSTLGKHSRDGSTLKEAAMKQNLWVPKTVRINGPEEAANSSIWTTLGTKSEHNKIIIKGSVFKSFESKTSADDNRIRRTNPAAFSRSESFQESM* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02126 474 PANTHER CYCLIC DOF FACTOR 2 1 473 IPR045174 GO:0003700|GO:0006355
Lapu3g02126 474 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Lapu3g02126 474 MobiDBLite consensus disorder prediction 65 85 - -
Lapu3g02126 474 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Lapu3g02126 474 MobiDBLite consensus disorder prediction 448 474 - -
Lapu3g02126 474 MobiDBLite consensus disorder prediction 460 474 - -
Lapu3g02126 474 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
Lapu3g02126 474 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02126 Lapu-Chr3 41197059 41200198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02126 97 473 C2C2-Dof Transcription Factor Family AT5G39660 36.029 2.37e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g02126 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02126 - - vun:114177215 749.584