Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02004 ATGGTACCACCAGAAGGCATGCCACCAACACCGAAAGACCATGAGGTCACTGAGGGCCGCAAAACGACCAGGCCAGCACCGGAACAAGGTGTGAAGTGCCCTAGATGTGACTCACCAAACACCAAGTTTTGCTACTACAACAACTACAGCCTCACTCAGCCCAGGCACTTCTGCAAGACGTGCAGGAGGTACTGGACCAACGGTGGTGCTTTGCGCAACGTCCCAATAGGAGGTGGTTGCAGGAAGAACAAAAAGGTGAAACCTTCTTCCTCTTCTTCATCCTCCTCCAGACTCTCGTGTGACCCCAAAGACTTCAATTTTCATGGTCTCACAGTTTCACCTTCCGTTGACTTTAATCTCGGTGGGTTACCCTTTCCCTCGAGGCTCAGCACTTTCAACACTCAACACCTTCCAACACCCCCCACTGGGGTGTTCAACCAGTTCTCTTCTTTTGGGGACGTTTCATCAGCTTCAACCAGTTCTCTTTCTGCTTTGTCTGCCTTCCAACTTGACCCCCCTGCTGCTGTTTCAAACCCTCTCTTGGGTCTTGTTCCGCCCAATCCTGACCTCTGGGCACTACGTAGGTCCGAAAGGGCCTCACTGTCTGACCCATTGAATAGTGCAATGCAAACACTGCAGACTATGGAAGCCATGAACGTTCACAGCAGCCTTGCCTCGTCAATTGAGTCGCTGAGCAACATCAACCAGGACTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCAACAATGATGTTCGGTGGGGACAGCCAGAAAGGTGAGAGCAGCGTTGCGCTGAATGGGTTTGGGAATCAGAAGCTGCTACAACCGGTTTCGTTTCAGAACCTTGCGATTTCGAAGCCAGAGAATTTGCCAGCTGGCAGTTCCATAAATGGGGGCCCAAGTGGGGAGACAGTTACTGCAGCATCCACCGAATGGTTCTTTGGGAATTCCTTTCCCTCAGTGTCTCCTTCAACAAGCAATGGTGGTGTCAATGTTAACCACATCAACAACGATGCAAACAACAACTGGACTGGCGCCCTTGCCTGGGGGGATTTGCAGCAGCAACCATACAGCGCTTTGCCCTAG 1086 0.5193 MVPPEGMPPTPKDHEVTEGRKTTRPAPEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSSSSSSRLSCDPKDFNFHGLTVSPSVDFNLGGLPFPSRLSTFNTQHLPTPPTGVFNQFSSFGDVSSASTSSLSALSAFQLDPPAAVSNPLLGLVPPNPDLWALRRSERASLSDPLNSAMQTLQTMEAMNVHSSLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSVALNGFGNQKLLQPVSFQNLAISKPENLPAGSSINGGPSGETVTAASTEWFFGNSFPSVSPSTSNGGVNVNHINNDANNNWTGALAWGDLQQQPYSALP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02004 361 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Lapu3g02004 361 MobiDBLite consensus disorder prediction 76 99 - -
Lapu3g02004 361 MobiDBLite consensus disorder prediction 85 99 - -
Lapu3g02004 361 MobiDBLite consensus disorder prediction 1 32 - -
Lapu3g02004 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 246 IPR045174 GO:0003700|GO:0006355
Lapu3g02004 361 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Lapu3g02004 361 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02004 Lapu-Chr3 38473090 38474175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02004 9 361 C2C2-Dof Transcription Factor Family AT5G65590 36.675 8.28e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g02004 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02004 - - gmx:102663483 395.201