Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01595 ATGCCATCGTCCAACTCCGGCGAGAGCCGCCGAGCGACCAAGCCCCAGACCTCCGCCGGAGCGCCGCCCCCGCCGGAACAAGAGAACCTCCCCTGTCCCCGTTGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGTCCTGCCGCCGGTACTGGACCCACGGCGGTACCCTCCGCGACATCCCCGTCGGCGGTGGTAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACACTGCCACGTCATCCTCCTCCTCCACCATGACATCACCCCAGGAGCACGCTCTACCCGCATTGGCCCCTGTCCCTACGACCCAAGGGGGGTCCATGCATTTCGTCGACGGTGACGTTAATAAGCAGAATAACGTTAATGTCTGCGGGAGCTTTACTTCGTTGCTGAACAACACCCAGGGTAATGGGTTTCTCGCCCTCGGCGGGTTTGGGCTTGGGCTGGGACACGGGTTCGAGGATATGGGCTTCGGGATTGGCAGGTCGGGCTGGGGCTTCCCCGGAATGGTGGATGGTGCCAACATTGGCGGCGCCGTTCCGTCTTCTGGATTGAGCACGTGGCAGTTAGAGAGTGGCGAAGGTGGGTTTGTTAGTGGAGACTGTTTCTCGTGGCCTGGCCTTGCGATTTCCACACCGGGGAATGGTCTCAAATGA 699 0.6123 MPSSNSGESRRATKPQTSAGAPPPPEQENLPCPRCESTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHTATSSSSSTMTSPQEHALPALAPVPTTQGGSMHFVDGDVNKQNNVNVCGSFTSLLNNTQGNGFLALGGFGLGLGHGFEDMGFGIGRSGWGFPGMVDGANIGGAVPSSGLSTWQLESGEGGFVSGDCFSWPGLAISTPGNGLK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01595 232 MobiDBLite consensus disorder prediction 89 105 - -
Lapu3g01595 232 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Lapu3g01595 232 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Lapu3g01595 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 151 IPR045174 GO:0003700|GO:0006355
Lapu3g01595 232 MobiDBLite consensus disorder prediction 71 106 - -
Lapu3g01595 232 MobiDBLite consensus disorder prediction 1 16 - -
Lapu3g01595 232 MobiDBLite consensus disorder prediction 1 32 - -
Lapu3g01595 232 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01595 Lapu-Chr3 19693432 19694919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01595 1 232 C2C2-Dof Transcription Factor Family AT3G50410 49.804 7.15e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g01595 zf-Dof 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01595 - - gmx:778095 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01595 3 19693432 19694919 Lapu3g01595 3 19693432 19694919 ECH