Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01585 ATGATCCAAGAACTGTTGGGTGGAGCTAGCCTCATAGCAGGAGAAAGAAAACCCTCCATTAATGGAGGAGGAGGAGGAGTGCTACTCCCAACTACACCATCTCCCTCTTCTCTTCCTTCTTCCACGACTAACAATGTTACCCTCACATCTGCTACAACAACTACTACTGCCACCACCACCACTACTCCCACATCGGAAAACCAAAACCTGAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACGTGCCGCCGCTACTGGACCAAAGGCGGCGCTCTCCGCAACGTTCCCATCGGCGGCGGATGCCGGAAAAACAAGAACATCGGCGTGGCGAACTCAGTGGCAAAGACTGCCTCAACCAAGATGAAAACCGTAGCATCTGAGCTAGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACATGAGCTTCCACCACCGAGTCAAATCCTTTGGGGTTCCCCCCAAAACAATCACCTTCTGGCTCTGCTGAGAGCTACTCAAAATCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATCAAGGAAGAAGGGACCCTAATGGGTCATATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAACCTTAGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGTCTGTTTGGGAGAAGCAATCAAGATCAACAACAAAACGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCGTCATCGGCTAATAATTATTGCAGTGATAACTCGTCACAAGTGTTTATGGGGAACATGGCTTCTAATTACTCCTCTTCTGTGACCAACAACATTATGGAGACAACTTCGGTTGCTGGGGGAGAATTCGGATACTGGAACGGTCCAACCTTTTCGTGGTCTGATCTTCCAACAACGAATGGCGCTGGTGCATACCCGTAA 1011 0.4965 MIQELLGGASLIAGERKPSINGGGGGVLLPTTPSPSSLPSSTTNNVTLTSATTTTTATTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKTVASELGKSPGFGGFEVEHELPPPSQILWGSPQNNHLLALLRATQNQNPNPNPSPMSIKEEGTLMGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLFGRSNQDQQQNGGFLLGEHHNSGIQELYQKLRSSSANNYCSDNSSQVFMGNMASNYSSSVTNNIMETTSVAGGEFGYWNGPTFSWSDLPTTNGAGAYP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01585 336 MobiDBLite consensus disorder prediction 30 70 - -
Lapu3g01585 336 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Lapu3g01585 336 MobiDBLite consensus disorder prediction 14 70 - -
Lapu3g01585 336 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Lapu3g01585 336 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
Lapu3g01585 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 271 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01585 Lapu-Chr3 19470575 19471585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01585 57 155 C2C2-Dof Transcription Factor Family AT5G60200 59.804 2.19e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g01585 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01585 - - gmx:778108 507.679