Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01507 ATGATGGCCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCGGAAGAGGATGAGGCCTTGCAGAAGCTGGTGGAGAGGCACGGGCCCAGAAACTGGTCTCTCATCAGCAGGTCAATCCCGGGCCGCTCTGGGAAATCCTGCAGGCTCCGATGGTGCAACCAGCTGTCGCCCCAGGTTGAGCACCGGGCCTTTACGCCCGAGGAGGACGACACCATAATCCGGGCCCATGCCCGCTTCGGTAACAAGTGGGCTACCATAGCCCGCCTCCTCTCGGGCCGAACCGATAACGCTATCAAAAACCACTGGAACTCAACCCTAAAGCGTAAGTGCGCCTCCATCATGATCGCCGACGATCCCGCCGCTGCCGCTGCCGGTTTCAGCCCGCAGCCGCTCAAGCGCTCCGTCAGCGCCGGCGCTGCGCTGACCCCGGGAAGCCCCTCGGGATCCGATGTGAGCGAGACCAGCGCCCCCGCCCCCGGCGTAGTCTCCCCATCGCACGTGTTCCGGCCCGGTTCGCCCCGTGGTCGAAACGGCGTCGTCGTGCGACGACGGACCTACCACTTCGCTGTCGCTGTCTCTTCCCGGCGTCGAGTCTTCGGAAACCTCGAATCGGGCGACGGCGATGCAAGGCAATCCCTTCGTGACAGTGGCGGCGGGCGGCGTGGCGACTCCGGCGGCGGAGGTTGGGATGGGAGCATTGAATTTGAGTGCGGAGTTTATGGCGGTTATGCATGA 747 0.6412 MMAVSRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMIADDPAAAAAGFSPQPLKRSVSAGAALTPGSPSGSDVSETSAPAPGVVSPSHVFRPGSPRGRNGVVVRRRTYHFAVAVSSRRRVFGNLESGDGDARQSLRDSGGGRRGDSGGGGWDGSIEFECGVYGGYA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01507 248 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Lapu3g01507 248 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Lapu3g01507 248 CDD SANT 15 57 IPR001005 -
Lapu3g01507 248 Pfam Myb-like DNA-binding domain 16 74 - -
Lapu3g01507 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Lapu3g01507 248 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Lapu3g01507 248 Gene3D - 66 125 - -
Lapu3g01507 248 MobiDBLite consensus disorder prediction 144 163 - -
Lapu3g01507 248 CDD SANT 67 110 IPR001005 -
Lapu3g01507 248 Gene3D - 12 64 - -
Lapu3g01507 248 FunFam Transcription factor MYB44 67 113 - -
Lapu3g01507 248 SMART sant 12 61 IPR001005 -
Lapu3g01507 248 SMART sant 64 112 IPR001005 -
Lapu3g01507 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Lapu3g01507 248 PANTHER MYB PROTEIN-RELATED 13 151 - -
Lapu3g01507 248 MobiDBLite consensus disorder prediction 204 235 - -
Lapu3g01507 248 FunFam MYB transcription factor 13 64 - -
Lapu3g01507 248 MobiDBLite consensus disorder prediction 139 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01507 Lapu-Chr3 17689265 17690132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01507 1 174 MYB Transcription Factor Family AT4G37260 65.946 4.30e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g01507 Myb_DNA-bind_6 2.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00531 2 4557964 4560292 Lapu3g01507 3 17689265 17690132 ECH
Lapu9g02124 9 35953569 35954671 Lapu3g01507 3 17689265 17690132 ECH
Lapu8g00848 8 26636696 26637858 Lapu3g01507 3 17689265 17690132 ECH
Lapu3g01507 3 17689265 17690132 Lapu3g01507 3 17689265 17690132 ECH
Lapu3g01507 3 17689265 17690132 Lapu2g00531 2 4557964 4560292 PCT