Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01121 ATGGGTTTTTCCTCTCTCAACGTCTGCATGGACTCATCAGATCAATGGCTGCAGGGCACAATTCACGAGGAGTGTGGCGTGGATTCTTCTTCACCATCTGGCGACATGCTTCCATGCTCGAGACCAATGACAGAGAGGAGGCTAAGACCCCCACAAGAGCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCCAGGTACTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTTTCTACTAAGAAACACAATGACCACCAACCGGCTATTAATCAAAACCAAACACACCCTGCAGCACCCTCTTATCTTCATAATCACAAAGATCTTCAACATCCTTTCCTGGATGTTCAATTTTCTCACCTCAACAATTTACTTGGGACTAGTGCCGGGGTACTGGGAAACCCTAATTTCATGGAGAGTAAGTATAACATGGGAATGCTAGAGAACCCTAGACCTATTGGCTTCATGGAAAGCGGGTTGGATGGAATGAATATGATTAGGGGTTCTACAAGGAGTTTGGATCTTCTTGAAAGTAGTGATATGAGTGTGGGTGGTGGTGTTGGGCTTAGTGATATGAGTGGCTACAATGAATTGCCATTGAATTATCAAGGTCTTTCTACTGCAGCATTTGGAGGCATATCCCTTGATGGAAGCATTAGCAACGTTGGAACATATATAATGGACTCTTGCCAGCGACTTATGTTGCCCTATGATGGAAGTCATAACATCCTTAACGGTTCAATTGATGTGAAGCCAAACCCTAAGCTGTTATCCCTTGAATGGCAAGATCATGGTTGCTCTGATGCTGAAAAAGTGTCATTGGGATATCTTAATGGTTCAGGAGCATGGGGCGGCTATGGATCTTCCACAACAAATCCTTTGGTCTAG 987 0.4488 MGFSSLNVCMDSSDQWLQGTIHEECGVDSSSPSGDMLPCSRPMTERRLRPPQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDHQPAINQNQTHPAAPSYLHNHKDLQHPFLDVQFSHLNNLLGTSAGVLGNPNFMESKYNMGMLENPRPIGFMESGLDGMNMIRGSTRSLDLLESSDMSVGGGVGLSDMSGYNELPLNYQGLSTAAFGGISLDGSISNVGTYIMDSCQRLMLPYDGSHNILNGSIDVKPNPKLLSLEWQDHGCSDAEKVSLGYLNGSGAWGGYGSSTTNPLV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01121 328 MobiDBLite consensus disorder prediction 117 137 - -
Lapu3g01121 328 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Lapu3g01121 328 MobiDBLite consensus disorder prediction 118 133 - -
Lapu3g01121 328 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Lapu3g01121 328 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Lapu3g01121 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 154 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01121 Lapu-Chr3 12107514 12109671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01121 1 299 C2C2-Dof Transcription Factor Family AT5G62940 41.566 5.34e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g01121 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01121 - - gmx:100815061 603.979