Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01020 ATGCACGAAAATAGAGATCCTGCGATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAAGAAGAATACGAGGGTGGTGATGGAATAGAGCAAGACATAGAAGAGGATAAGGATGCTGGAGTTGAAAATGTTGCCGAGGAAGAGCTAGAAGCTGATCCTCCTCCAAGTGCAGAAGAGACTAAAGATTCAGGTACATCCCCTGAGGCTATTGTGAACCCCAAAACACCCTCCATAGAAGAAGAAACAGCAAAATCAAAATCTGACAAATCAGAGAAGGAGCAAGGCGATGCAGCCAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTCCTACCATGTCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACAACTACAACGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTCGGGGCAGGGCGGCGAAAGAACAAGAACTCTGCCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCCTAATGGAACTCATCTTCCAACTATAAAAGCCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCACATACACCAATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCTAATGGCACAAAAAATGGGTTTCATCATGGCTTTGAGGATCAAAGACTCCCTATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCTTCAACTACATCTTCCATTACAGTTTCAAATTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACAACAACCGGTGCTCCAACATCATGGTTTCCTTTCTCAACTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCAGTTCCCCCACCTGCTTTGTGTCCTTCCGGATTTCCCTTACCATTCTATCCTCCTGCTACATTCTGGAACTGTGGCATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCAAACTCTCCAAGCTCCGCTCCAAACTCTCCGACATTGGGGAAGCACTCGCGCGACGGAGACATGATTAAGCAAGACACTTTGCACAAAGAAGAAGCTCAAAAGCCAAGAAACGGGGGTGTTTTGGTTCCCAAAACGTTGAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCGGTGAGTGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGACAAAAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTTAATTTTCATGAGAACTCATGA 1413 0.4494 MHENRDPAIRLFGQKIPFPEDVDIEEEEEEEYEGGDGIEQDIEEDKDAGVENVAEEELEADPPPSAEETKDSGTSPEAIVNPKTPSIEEETAKSKSDKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLPTIKANGRVLSFGLDAHTPICDSMASVLNLGEKKVPNGTKNGFHHGFEDQRLPIPRKSGENGDDSSTTSSITVSNSMGESSKSTFQQQPVLQHHGFLSQLPCVPWPYTWNSPVPPPALCPSGFPLPFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPSSAPNSPTLGKHSRDGDMIKQDTLHKEEAQKPRNGGVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGGMFKAFQSKKDKKNHVEASPVLMANPAALSRSLNFHENS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01020 470 PANTHER CYCLIC DOF FACTOR 2 1 470 IPR045174 GO:0003700|GO:0006355
Lapu3g01020 470 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Lapu3g01020 470 MobiDBLite consensus disorder prediction 246 260 - -
Lapu3g01020 470 MobiDBLite consensus disorder prediction 354 377 - -
Lapu3g01020 470 MobiDBLite consensus disorder prediction 21 62 - -
Lapu3g01020 470 MobiDBLite consensus disorder prediction 88 120 - -
Lapu3g01020 470 MobiDBLite consensus disorder prediction 241 289 - -
Lapu3g01020 470 MobiDBLite consensus disorder prediction 354 370 - -
Lapu3g01020 470 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Lapu3g01020 470 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Lapu3g01020 470 MobiDBLite consensus disorder prediction 262 289 - -
Lapu3g01020 470 MobiDBLite consensus disorder prediction 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01020 Lapu-Chr3 10930804 10934368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01020 1 468 C2C2-Dof Transcription Factor Family AT3G47500 49.696 1.19e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g01020 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01020 - - gmx:778113 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01020 3 10930804 10934368 Lapu9g00695 9 8594068 8597726 ECH
Lapu3g01020 3 10930804 10934368 Lapu3g01020 3 10930804 10934368 ECH