Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00947 ATGCAGCAAATACACTCCATGGCAGCAGGAACAGGAGGAGGGGGAGCCAGGTTTTTCTCCGGCACTGCTGCTGTCGACAGAAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGTCCCCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGAGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGCAAATCCAAGCGCTCCAACAAACCCGCCAAAACCTCCGACACCGTACCCCCTCCCCCGCCGCCCGACCCCGAGCATTCCAGCAGCGAGAGCTCCAGCCTCACCGCTGCTGCCGCCGAGCCAGTATCGGCGCCGATGAACTCCGATTCCTCCAACATGCAAGAGTCGAAGTTGTTGGTCCCCGTGGATCCTGTTTTGGAAACGAATCCTCTGGAGCAAGGAGCAGGGGACTGCGGTGGTATCTTCTCTGAGATTGGACCTTTCACCAGTCTGATCGCTACTTCCACTAACGAGCCATTGGCTTTCGGTTTCGGCAACGCTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAAGGTGACCAGTAACCAGGAATTGAAGCTGCCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGTCGGCTCTTCATAGTAAAACCAACCTCGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTTCATCTCCCCTGA 852 0.5716 MQQIHSMAAGTGGGGARFFSGTAAVDRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDTVPPPPPPDPEHSSSESSSLTAAAAEPVSAPMNSDSSNMQESKLLVPVDPVLETNPLEQGAGDCGGIFSEIGPFTSLIATSTNEPLAFGFGNALPDASSFQWQHSKVTSNQELKLPESSFLDHTVDLSALHSKTNLGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00947 283 MobiDBLite consensus disorder prediction 115 142 - -
Lapu3g00947 283 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Lapu3g00947 283 MobiDBLite consensus disorder prediction 84 142 - -
Lapu3g00947 283 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Lapu3g00947 283 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Lapu3g00947 283 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 200 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00947 Lapu-Chr3 10228228 10230212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00947 26 280 C2C2-Dof Transcription Factor Family AT5G60850 44.014 2.88e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu3g00947 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00947 - - gmx:778097 420.624