Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00937 ATGGCACAAGATACTGTTTTTGGTGCTGACTCACCTCGACGACGTCTATTGCGAGATCAGGTTCAAGTGGTTAAAAGAAAGGGTTCTGATCGCTATGAAATTGTTCCTATCCAAGATTCCCTGTCATTTGAGAAAGGATTTTTCATATTCATTCGTGCGTGCCAATTGCTGGCTCAAAAGAATGATGGAATCATATTAGTAGGAGTTGCAGGTCCATCCGGAGCAGGGAAAACTGTTTTCACTGAGAAGATCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGACAACTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACGGATTATGATACCTTGCTTGAAAATATACAGGGTCTTAAAGCGGGGAAGCCTGTTCAAGTTCCAATATATGATTTCAAGTCTAGTTCTCGCACAGGCTTCAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATAATAGAAGGCATCTACGCCTTAAGTGAAAAATTAAGGCCTTTGCTTGATCTTCGTGTTTCTGTCACGGGTGGAGTTCATTTTGACCTTGTTAAGCGTGTATTACGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTATATTGAGCCAGATCTCCAAACAGCGCATATAAAAATCATTAACAAGTTTAATCCATTTTCTGGATTTCAGAATCCCACATACATATTGAAGTCAGCAAGATCTGTGACAGTTGATCAAATCAAGGAAATTATTGCTGCACAGCATACTGAAGCCAAAGAGGAAACGTATGACATATTTCTTCTACCGCCAGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGAATGAGAAACCGCGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCTCCTAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGTTGATGGCCTTAGGATACACAATTGCATCTATCCTAAAAAGAAGCAGCCATATTTTTCGTGATGATAAAGTGACCATAAAAACTGATTGGTTAGAACAACTTAATCGCACATATGTTCAGGTGCAAGGGAAAGACAGGAACTATTGCAAATTTGTAGCAGAGAAACTCGGATTGGATGGTTCCTATGTTCCTCGCACTTATATTGAACAAATTCAGCTAGAAAAGCTTGTGAACGATGTGATGGCATTGCCAGATGATCTCAAGTCAAAACTCAGCATAGAGGATGACTTAGTTTCAAGCCCCAAAGAAGCCCTTTCTCGAGCTTCTGCAGATAGGAGAATGAAATATCTTAATCGTGGTATTTCACAATCGTATTCGACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCAATAAACAACAGAAGATTCGATGGAAGAGCTCTTGAATCACCTGCATCGATTTCTAACCAGGGGGTCATCACCCAACTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGATGAATTCACCTCCCGTGTTGAAGAATTGAATTCAAAGTTTGCTAGCAAAAAGGTTTCAGCCAGTCAACAAAACTTGGCTTCACAGGCTGAGGTCAGTAATGGCTCGGGCTCCACTTCCTTCTTTGTAACTGGATTAGGCAATGGTTCATTGACTGGATCATTGCTGCCTAATTCTTCATCATCTTCTCAATTGGCGAAAGAGTCTCCCCTGATGGATGAGGTATTAGTTATTGCACGGGGCCAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATCTTTTGCGTGAACACTTTGGAGAAAGGTCGCGCCTAGGAAGATCAAATCAGACAGGTAGAATGCGTGAAGCTGAATCTATTGCCATCCCTATGGTTCTGACTCTGGCCATTGGTGTTGTTGGTGTGTTTTTGTTCAAAGGTGTGACATCCCAAAAATAG 1980 0.4086 MAQDTVFGADSPRRRLLRDQVQVVKRKGSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRTGFRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKIINKFNPFSGFQNPTYILKSARSVTVDQIKEIIAAQHTEAKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIASILKRSSHIFRDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKSKLSIEDDLVSSPKEALSRASADRRMKYLNRGISQSYSTQRDKILPKLTKLAINNRRFDGRALESPASISNQGVITQLSDQISTLNERMDEFTSRVEELNSKFASKKVSASQQNLASQAEVSNGSGSTSFFVTGLGNGSLTGSLLPNSSSSSQLAKESPLMDEVLVIARGQRQIMHQLDTLSNLLREHFGERSRLGRSNQTGRMREAESIAIPMVLTLAIGVVGVFLFKGVTSQK* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00937 659 CDD UMPK_like 66 238 - -
Lapu3g00937 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 235 IPR027417 -
Lapu3g00937 659 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Lapu3g00937 659 SUPERFAMILY CYTH-like phosphatases 258 406 IPR033469 -
Lapu3g00937 659 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Lapu3g00937 659 Pfam CYTH domain 270 403 IPR023577 -
Lapu3g00937 659 Gene3D - 65 255 IPR027417 -
Lapu3g00937 659 PRINTS Uridine kinase signature 223 236 - -
Lapu3g00937 659 PRINTS Uridine kinase signature 131 146 - -
Lapu3g00937 659 PRINTS Uridine kinase signature 64 81 - -
Lapu3g00937 659 PRINTS Uridine kinase signature 187 197 - -
Lapu3g00937 659 PANTHER URIDINE KINASE 17 422 - -
Lapu3g00937 659 Coils Coil 499 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00937 Lapu-Chr3 10072941 10085688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00937 66 320 PRT Gene Family AT5G40870 25.379 8.63e-18 85.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00937 3 10072941 10085688 Lapu3g00937 3 10072941 10085688 ECH
Lapu3g02525 3 47316171 47339765 Lapu3g00937 3 10072941 10085688 PCT