Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01424 ATGTCTGAGGCTGTTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCTCGCCACATCGAGGTTTCTGCTAATGGTTCATCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCACCACAGTCCTCCTTCATCTTCATCTTTTCCACGTGAAGTGAGCTCCACAACGGAACATGAACCTGAGAGGGATAAGGAATCATTGAGGAAAGAACTCACCTCAACACAAGATGAAGAAGCCTTACATGAAGAACCAAAATCTCCAACATCTTCATGCAATCTCGAGAACCCCAAGACCCCCTCAACTGAAGTAGAAATTTCCTTACTGAAATCACCTAAAAAAGGAGACCAAAGTGACACAACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATACTTCCATGCCCCCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCACTTCTGCAAGCATTGCCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAATAAAAACTCTTCCTCCACTGCATCTCATTATCGTCAAATCATGGTTCCTGAGACCCTTCAGAACAGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACACAAAATGGTGTTCTCAACGGGTTTCATTCACCTAAGCATAATGTTAGCACTGTTAATAATAATACTGGGGATGACATTAGCTCAGTTGGTGCTCCTGTTATGGCTTCTACGTTGTGTGAGATGAGAGACAATGCTACTAGCTCTCATGAAGAATCAGTGGATAAGATTTATCATCAAGGTTTCACTCCTCAATTATGCCTCCCAGGTTCTTCTTCATCATCTTCTTCTCCTTGGCCTTATCCATGGAACCCTGCAGTGACTCCTTCTGCTTTTTACCAACCTGTGTCATTCTACCCCACACCAGCATTCTGGGGATGCATGCCACCACCCTCTTGGAGTGTTAATTACCAACCTGGCCCTAGTTCTGGTCCAAACTCACCAACCTTGGGAAAACATTCAAGGGATGGGGACATCTTGTTTCAAAAGCCTGGCACAGAAAGCATCAGCAACATGGCAGAAAAAAGCAACACTGTATTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCTATATGGTCAACACTAGGGATCAAGAATGAGAAGGGGAACCCTCTCAATGGAGGAGGCCTTTTCAAGGCATTTGCATCAAAGGGAGGTAGTGATGACAAGAAGAACCATGTTGTGGTTGAAGCATCCCCAGTGTTGCAAGCCAACCCCGCAGCCTTGTCAAGGTCTCTTGTGTTCCATGAGAGGACATAG 1443 0.4581 MSEAVKDSAIKLFGRTISLPRHIEVSANGSSSEPAPPQDYSHHHSPPSSSSFPREVSSTTEHEPERDKESLRKELTSTQDEEALHEEPKSPTSSCNLENPKTPSTEVEISLLKSPKKGDQSDTTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSSTASHYRQIMVPETLQNRSLHSAVLTFGSDFPLCDSMASVLSLAEKTQNGVLNGFHSPKHNVSTVNNNTGDDISSVGAPVMASTLCEMRDNATSSHEESVDKIYHQGFTPQLCLPGSSSSSSSPWPYPWNPAVTPSAFYQPVSFYPTPAFWGCMPPPSWSVNYQPGPSSGPNSPTLGKHSRDGDILFQKPGTESISNMAEKSNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNPLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFHERT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01424 480 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Lapu2g01424 480 PANTHER CYCLIC DOF FACTOR 2 1 480 IPR045174 GO:0003700|GO:0006355
Lapu2g01424 480 MobiDBLite consensus disorder prediction 122 137 - -
Lapu2g01424 480 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Lapu2g01424 480 MobiDBLite consensus disorder prediction 89 109 - -
Lapu2g01424 480 MobiDBLite consensus disorder prediction 17 139 - -
Lapu2g01424 480 MobiDBLite consensus disorder prediction 23 57 - -
Lapu2g01424 480 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Lapu2g01424 480 MobiDBLite consensus disorder prediction 58 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01424 Lapu-Chr2 26974366 26978366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01424 119 479 C2C2-Dof Transcription Factor Family AT3G47500 46.649 1.41e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu2g01424 zf-Dof 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g01424 - - gmx:100775201 682.174