Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g01176 ATGAAAAAGGAATTAGATGATCAAGGACAGTGTTCCTCTCAACCAATCAACAACAATAACAACAACATTCAAAGCTACCAAGAGCACCTTCTCCTCCAACAACAGATGCATCAGCAGCAACAAAACAGTGACATCTTCGGGGGTTCAAGAGGGTTAATGTTCCCTGAAGTTACTCCAATCATGCAACCATGGTCCATGCCTCCGGTTCACTCATTCAACCCGGGTCCTGTTCACTACAACAACACCAACCCTGTCCGAGACCATCATGACCAAACATTTATAGTCCCTCCCACACCTTCACCCTATGCAAGCTTCTTCAACAGAAGGGTCCCTTCTCTTCAGTTTGCATACGAGGGTCCTTCTTCTGATCACCACCATCTAAGGATCATATCTGACACCCTTGGACCTATGGTTCAAGCTGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGTAGTTTACTGCCTAACACTACCAAAACAGATAAAGCTTCATTGTTGGCTGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGTCAAACCTCCCTGATAGCGGAAACGAGTGCAGTGCCATCAGAAGCAGATGAGTTGACAGTGGATGCAGCTGACGAGGACGGAAAGTTTGTGATCAAAGCATCACTGTGTTGTGAAGACAGGTCAGATCTCTTACCCGACCTCATCAAAACGTTGAAGGCATTGAAGCTCAGAACCCTCAAGGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTAGTAATTGCTGGCGAGGATGAAAGTTCGAACACCAATGGAGAACAAAGCATGCAACAATATTGTATTACCTCAATACAAGAAGCACTCAAAGCAGTGATGGAAAAGAGTGGTGGTGGAGATGAATCAGCTTCTGGGAATGTCAAGCGCCAAAGGACTAATAATATCAATTTCCTTGAACAAAGGTCTTTATAA 1065 0.4545 MKKELDDQGQCSSQPINNNNNNIQSYQEHLLLQQQMHQQQQNSDIFGGSRGLMFPEVTPIMQPWSMPPVHSFNPGPVHYNNTNPVRDHHDQTFIVPPTPSPYASFFNRRVPSLQFAYEGPSSDHHHLRIISDTLGPMVQAGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSAVPSEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLIKTLKALKLRTLKAEITSLGGRVKNVLVIAGEDESSNTNGEQSMQQYCITSIQEALKAVMEKSGGGDESASGNVKRQRTNNINFLEQRSL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g01176 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Lapu2g01176 354 MobiDBLite consensus disorder prediction 1 21 - -
Lapu2g01176 354 Pfam Helix-loop-helix DNA-binding domain 169 215 IPR011598 GO:0046983
Lapu2g01176 354 CDD bHLH_AtAIG1_like 161 239 - -
Lapu2g01176 354 PANTHER TRANSCRIPTION FACTOR BHLH30 33 347 IPR045847 GO:0003700|GO:0006355
Lapu2g01176 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 222 IPR036638 GO:0046983
Lapu2g01176 354 FunFam transcription factor bHLH30 161 224 - -
Lapu2g01176 354 Gene3D - 161 222 IPR036638 GO:0046983
Lapu2g01176 354 SMART finulus 172 221 IPR011598 GO:0046983
Lapu2g01176 354 CDD ACT_UUR-ACR-like 251 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g01176 Lapu-Chr2 20706276 20710161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g01176 21 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.630 8.10e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu2g01176 HLH 2.4e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g01176 2 20706276 20710161 Lapu2g01176 2 20706276 20710161 ECH