Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00790 ATGTCACCCGATGACACACCACCTTCAAAGCCCGCCACAACAACAGACCAAGAGACTCAAAGTTCAGGTGGCAGAAAAGGCTCCTCCACAAGGCCCCAAGAGCAAGGCCTGAAGTGTCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCGTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTGAGATCATCAAGGCTTTCATGTGACTCCAAAGACTCTGGTTCCTCCTCTTCAGACCTTAGTGGCCTCAAGTTCCTTCACGCTCTTCCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTTCACCATCACCCCCCAGCAACTTATAACCACTTCTCATCTTTTGGGGACACTTCTAGTGCTCCTTCCTGTTTCAATCTTGACCCTTCTCCTGGCACCACCTCAAGTTCTTTAGCTGCTCTTAATTACCCCTTCTCTTACAATGGTGCAATCCAAGGTATGAGCGCTATGAATGTTCACAGTGGTCACGCATCTTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTGTCAATGTTGTTTGGTGGAGATAACAGCCAGAAAGATCATGGTGGTAGTGGCGGGGTGTCATCAACGGTTAACCACCTTGAGAGCCAGACACAGAAACCACAACCCATTTTGTTTCAAAATCTTGATGTTTCAAAGCCAGGGATTTTTCCCGTTGAGAACTCTAGAAAAGAACATGGTCTAAGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTACTCCTACAGCTACTACTACCAGTAGTGGTGGCCCGGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTCCATGCTTGGGGTGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1026 0.4903 MSPDDTPPSKPATTTDQETQSSGGRKGSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLSGLKFLHALPPSMDFHLGGLPFPRLHHHPPATYNHFSSFGDTSSAPSCFNLDPSPGTTSSSLAALNYPFSYNGAIQGMSAMNVHSGHASSIESLSSINQDLHWKLQQQRLSMLFGGDNSQKDHGGSGGVSSTVNHLESQTQKPQPILFQNLDVSKPGIFPVENSRKEHGLSGDTHTPSTEWFFGNSYASVTPTPTATTTSSGGPGNDNASNWSSGVHAWGDVPQQYTALP* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00790 341 MobiDBLite consensus disorder prediction 304 331 - -
Lapu2g00790 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 223 IPR045174 GO:0003700|GO:0006355
Lapu2g00790 341 MobiDBLite consensus disorder prediction 7 35 - -
Lapu2g00790 341 MobiDBLite consensus disorder prediction 234 252 - -
Lapu2g00790 341 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Lapu2g00790 341 MobiDBLite consensus disorder prediction 1 39 - -
Lapu2g00790 341 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Lapu2g00790 341 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Lapu2g00790 341 MobiDBLite consensus disorder prediction 227 252 - -
Lapu2g00790 341 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00790 Lapu-Chr2 7071379 7072404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00790 5 341 C2C2-Dof Transcription Factor Family AT5G65590 37.464 9.65e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu2g00790 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00790 - - gmx:100780729 563.918