Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00596 ATGATCCAAGAACTGTTGGGTGTTGCTACTGCTACTCTCATAGCAGGAGAAAGAAAAATATCCATTAATAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACTTCTACTAACGCCACCCACACCATCTTCTCCTTCTCCATCTCCATCTCCATCTCCATCTGCTTCTTTCACAACAGCAATCACCACTTCAACTAACACCGCCACTTCATCCAACTTGGACAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCGAACACGAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAGAGCTCCGGCATGTCCAACTCTGTGGCAAAGCAAGCCGCCACAAAGATGAAAGCAGCGGCACCAGAGCTTGGAAGGTCACACGGACTCTTTGACCAAGAGTTTCCACAAACCCCAATCCTGTGGGGTTCACCGCAAAATACTCAACTGATGGCTTTACTGAGAGCTACCCAAAACCAAAACCCTAACCCTAACCCTACTCCCGTGTCAATTGCTGTTAAGAGCGAAGGGAGGTTAGTGGGATCTCACTCTCACATGGTCACTGAGCCATTGCTCGCAAATGGGTTGTTGAATAGTACTAGAACTAGTCTAGGCTATGATGGTGTGGGAGAACTTCCTTCACTGGGTTTATGCAGCTCCTTTTGGAGGAATAATCAAGACCACAATCAGCAACAAAGCAACGGTTTTGTACTTGGAGAACAGCAAAGTAGTGGAGCTCAAGAACTTTACCACAAGCTCAGGTCATCGTCATCAGTTAATTATTGTGGCAGTGATAACTCGCCAGTGTTTCTCGGCAACATGGCTTCTTCCTCTTCTTTGTCCAACATTTTGGAATCATCTTCAGTTTCTGGAAGCGAGTTCGGGTGCTGGAATCCAACCCTTTCTTGGTCTGACCTTCCCACAACAAGTGGAGCATATCCTTAA 1035 0.4763 MIQELLGVATATLIAGERKISINNGGGGGGGGGGLLLTPPTPSSPSPSPSPSPSASFTTAITTSTNTATSSNLDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGMSNSVAKQAATKMKAAAPELGRSHGLFDQEFPQTPILWGSPQNTQLMALLRATQNQNPNPNPTPVSIAVKSEGRLVGSHSHMVTEPLLANGLLNSTRTSLGYDGVGELPSLGLCSSFWRNNQDHNQQQSNGFVLGEQQSSGAQELYHKLRSSSSVNYCGSDNSPVFLGNMASSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTSGAYP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00596 344 Pfam Dof domain, zinc finger 76 132 IPR003851 GO:0003677|GO:0006355
Lapu2g00596 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 272 IPR045174 GO:0003700|GO:0006355
Lapu2g00596 344 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Lapu2g00596 344 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Lapu2g00596 344 MobiDBLite consensus disorder prediction 25 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00596 Lapu-Chr2 5199751 5201360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00596 45 138 C2C2-Dof Transcription Factor Family AT5G65590 63.830 2.21e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu2g00596 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu2g00596 - - gmx:778100 486.878