Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu2g00531 ATGGACCGTATCAAAGGCCCGTGGAGCCCGGAGGAGGACGAGGCTCTGCAGAAGCTGGTGGAGAAGCTCGGGCCCAGGAACTGGTCCCTCATCAGCAAGTCCATCCCGGGCCGCTCCGGCAAGTCCTGCAGGCTCCGCTGGTGCAATCAGCTCTCCCCCCAGGTCGAGCACCGGGCCTTCACGCCCGAAGAGGACGACACCATAGTCAGGGCCCATGCTCGCTTCGGCAACAAATGGGCCACCATAGCTCGCTTGCTCCAGGGCAGAACCGATAACGCAATCAAGAACCACTGGAACTCCACGTTGAAGCGCAAGTGCGCCTCAGCCATGATGGACGATCATCCTCCACCGCTCAAGAGGTCCGTCAGTGCCGGCGCGGCTATCCCTGTGTCCACTGGACTCTACATCAACCCTCCCACACCCGGTAGTCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTACCAGTTGCATCCCCCTCACACGTCTTCCGGCCCCTACCCAGGACCGCCGCGGTTCTACCGCCCGTAGAAACCACCTCTTCCTCCAATGACCCTCCAACTTCCCTTTCACTGTCCCTCCCCGGTGTCGACTCTTCTGAGGTCTCCAATCGAGCAACCGAGCCAACCCACCCCGTACCGCCGCTACAGCCCTCGAACACCATCCCCTTGCTGCCAATGATGGCTGCTCCCGTGGCGGTGGTGCCGCAGTTGACGCCACCCGGGTTGGGGGCTTTCAATTTGAGTTCGGAGTTTTTGGCGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGCGCCAGAATCCGAATGGGATGTGTTTTCAGGCCGCAGATGATGGCTTTAGGAATACTTCCGTCAAGCGGATTGGGATTAGCAGGGTCGATTCGTAA 900 0.5989 MDRIKGPWSPEEDEALQKLVEKLGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCASAMMDDHPPPLKRSVSAGAAIPVSTGLYINPPTPGSPSGSDVSESSVPVASPSHVFRPLPRTAAVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRATEPTHPVPPLQPSNTIPLLPMMAAPVAVVPQLTPPGLGAFNLSSEFLAVMQEMIRKEVRSYMERQNPNGMCFQAADDGFRNTSVKRIGISRVDS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu2g00531 299 SMART sant 4 53 IPR001005 -
Lapu2g00531 299 SMART sant 56 104 IPR001005 -
Lapu2g00531 299 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Lapu2g00531 299 Gene3D - 4 56 - -
Lapu2g00531 299 CDD SANT 7 49 IPR001005 -
Lapu2g00531 299 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Lapu2g00531 299 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Lapu2g00531 299 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Lapu2g00531 299 CDD SANT 59 102 IPR001005 -
Lapu2g00531 299 FunFam MYB transcription factor 5 56 - -
Lapu2g00531 299 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lapu2g00531 299 MobiDBLite consensus disorder prediction 175 215 - -
Lapu2g00531 299 MobiDBLite consensus disorder prediction 136 157 - -
Lapu2g00531 299 Gene3D - 58 121 - -
Lapu2g00531 299 PANTHER MYB PROTEIN-RELATED 5 182 - -
Lapu2g00531 299 FunFam Transcription factor MYB44 59 105 - -
Lapu2g00531 299 MobiDBLite consensus disorder prediction 135 161 - -
Lapu2g00531 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Lapu2g00531 299 MobiDBLite consensus disorder prediction 175 206 - -
Lapu2g00531 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu2g00531 Lapu-Chr2 4557964 4560292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu2g00531 2 298 MYB Transcription Factor Family AT5G67300 57.143 2.02e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu2g00531 Myb_DNA-binding 4.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00531 2 4557964 4560292 Lapu3g01507 3 17689265 17690132 ECH
Lapu9g02124 9 35953569 35954671 Lapu2g00531 2 4557964 4560292 ECH
Lapu8g00848 8 26636696 26637858 Lapu2g00531 2 4557964 4560292 ECH
Lapu2g00531 2 4557964 4560292 Lapu2g00531 2 4557964 4560292 ECH
Lapu2g00531 2 4557964 4560292 Lapu3g02458 3 46495256 46496917 PCT
Lapu3g01507 3 17689265 17690132 Lapu2g00531 2 4557964 4560292 PCT