Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01333 ATGTCGGAGGCAAAAGACCCGACGATCAAGCTCTTCGGGAAGACGATCCCGTTGTCGGAGACTCCGGCTGGATCCGCTGGGGCTCCGGCTTCGTCTTCCGGCGACGTTGTTGATGACAGTGTTGAACAGAGCCATGTTTCTTCCTCCAACTCCTCGAGGGAGTCTCATACGCGAGAGGAAGGTGTTGTTGACAAGGACTCACTGGGAGAAAAACCAGCTGATGATAAGAAGGAAGATGGAGCCCCAACACAATCATTAGAAGAGGTCAGCAATCCAGATACCGCCTCTGGAACCTGTGAAGAATCCATTACTCTACCCACCGACAAGGAGACCTCTCCATTAAAAACTTCGAAAACTGAAGAAGTAAGTGAGACAAGTAAATCACAGGATAAGAACCTCAAAAAACCAGACAAAATACTTCCTTGTCCCCGCTGTAATAGTATGGATACCAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCTCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACTATGAGGAACGTTCCAGTAGGTGCTGGTCGCAGGAAGAACAAGAGTTCTACTTCTCACTACCGCCAGATAACTGTTCCTGATGCTGCACTCCAGAATCCTCAAATTGACTTGCCAAATGGAGCGTATCATCCTTCCTTGAAATGCAATGGGACAGTCCTTACATTTGGTTCTGATGCACCCTTGTGTGAATCAATGGCCTCGGTGTTGAACCTTGCTGATAAAACCGTGCACAACTATGCAAGAAATGGATTTCATAAACCTGAAGAACTACAAGTTCCTGTTCCACATGCCAGTGGAGAAAAAAGAGATGATCAATCCAATAAATCTTCAGTTACCTCCACAAAGTCAGTGGAAGGTGCAAGCACCAATGGAACCCAAGAGCAAGCTACGCAGAACTGTCATCGCTTCCCACCACAAGTTCCCTACTTTACTGGTACCTCTTGGCCTATTCCATGGAATCCAGTGCAGTGGAGTTCTCCAGTACCACCGCCTGGTTTTTGTCCCCCTGGATTCACCGTGCCAATCTATCCTGCAGCAGCTTATTGGGGTTGTGCTGTGTCTGGTGGGTGGAACATCCCATGGGTAGCGCAACTGGCCTCACCCAATGGTGCTACTTCTAACTCTGGTCCTAACTCTCCAACCTTGGGTAAACATTCAAGGGAAGACAACGTTCTGAAATCAAATGAATCTGGTGGTGGTGAGGATGGACATAGCAAAGAAAACAACAAAGAAAAGTGCCTGTGGGTTCCTAAAACTCTAAGGATTGATGACTCGGGAGAAGCAGCAAAAAGCACTATATGGACAACACTGGGGATTAAAAATGACAAGGTTGACTCAGTTCCTAGGGAAACACTCTTTAAAGGCTTCCCTTCAAAACTTGATGAGAAAAACCATTCAATACAAGCCTCACCTTCTCCAGTCTTGCAGGCCAATCCGGCTGCGTTGTCAAGGTCACTTAACTTTCATGAGACCTCATAA 1515 0.468 MSEAKDPTIKLFGKTIPLSETPAGSAGAPASSSGDVVDDSVEQSHVSSSNSSRESHTREEGVVDKDSLGEKPADDKKEDGAPTQSLEEVSNPDTASGTCEESITLPTDKETSPLKTSKTEEVSETSKSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSTSHYRQITVPDAALQNPQIDLPNGAYHPSLKCNGTVLTFGSDAPLCESMASVLNLADKTVHNYARNGFHKPEELQVPVPHASGEKRDDQSNKSSVTSTKSVEGASTNGTQEQATQNCHRFPPQVPYFTGTSWPIPWNPVQWSSPVPPPGFCPPGFTVPIYPAAAYWGCAVSGGWNIPWVAQLASPNGATSNSGPNSPTLGKHSREDNVLKSNESGGGEDGHSKENNKEKCLWVPKTLRIDDSGEAAKSTIWTTLGIKNDKVDSVPRETLFKGFPSKLDEKNHSIQASPSPVLQANPAALSRSLNFHETS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01333 504 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Lapu1g01333 504 MobiDBLite consensus disorder prediction 84 112 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 468 490 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 36 51 - -
Lapu1g01333 504 PANTHER CYCLIC DOF FACTOR 2 1 504 IPR045174 GO:0003700|GO:0006355
Lapu1g01333 504 MobiDBLite consensus disorder prediction 1 140 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 275 315 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 381 422 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 475 490 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 398 422 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 381 397 - -
Lapu1g01333 504 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Lapu1g01333 504 MobiDBLite consensus disorder prediction 52 83 - -
Lapu1g01333 504 MobiDBLite consensus disorder prediction 113 138 - -
Lapu1g01333 504 Pfam Dof domain, zinc finger 137 194 IPR003851 GO:0003677|GO:0006355
Lapu1g01333 504 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01333 Lapu-Chr1 26072267 26075950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01333 6 504 C2C2-Dof Transcription Factor Family AT5G39660 42.802 2.30e-105 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu1g01333 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01333 - - gmx:100788247 792.341