Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01272 ATGGCCTTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCTCAAGTTGTGGGTAATGCATTTGTTGAGCAATATTACCACATTCTTCACCATTCACCAGATTTGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTTAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTGCTGGTGACTGGATGCTTGACTGGCAAGGATAACATGAGAAGAAAATTTTCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTTAATGATGTTTTTAGATATGTAGAAGATGATGAACCCTCAGAACTGCCTCCAGTTAATGGAGATGATGATGCAGCTGCTGTTAAAATAACCCCAGAACCAGAATCCAGTCATGTTGCTGATTCTCCTGCCCCAGACCCCACAAATTCTCTTGTGAACAAGGGTCAAATTGTTGCAGAGAATGCTTATGCTCCATCTAGTCATCATGAGAGACAGAAGCCTGTTGAAAATGAAGACAATGGAGAGCCCCATTTTCAGTCAAATGGAAATGATGATTCTCAGGCCACAGAAGGGGCTTCTTTAGCACAGGAGGATGCTCCAAAGCAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCAGTACCAACTAAAGTTTATGTGCCTACTAATACACTAAGGTCAGGGCGTAACAAAACTGAGAGTCTGGTAGTTGAGTCAGTAGAATCTGATGAAGTGCCTGAAGCAGCTTTGGATGGTGTTAATGACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAAGGACACTCCATTTACATTCGAAATTTACCTTTACATGTGACGGTTGGTCAGTTGGAAGTGGAGTTTAAGAAATTTGGACCTATCAAGCCGGAAGGCATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCAATGAACAGTGCAATTCAGGCTTCACCTATTCCTATTGGGGGGCGTCAAGCTGTAGTTGAGACAAAGAGAACCACTACTCGAGTTGGCAGTGGCATTAGCAATACTGGAAGACCTAGGATCCCACCCGGTAGGGGTGGGTTACGAAATGACACTTTCAGGGGCCGTGGGAACTATGGTGGCGGTCGTGGATATGGTCGACATGATTATGGAAGCCGTGGTGGTGACTTTTCTGGTAGAGGTCGCGGTTATGGTGAAGGCTATCACCAAGGGAGAGGGAGAGGTGGCCGGTCAAGCGGACCAAAACAGAATGTCGTTTCCAACTGA 1392 0.4397 MALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSNGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNMRRKFSQSFFLAPQDNGYFVLNDVFRYVEDDEPSELPPVNGDDDAAAVKITPEPESSHVADSPAPDPTNSLVNKGQIVAENAYAPSSHHERQKPVENEDNGEPHFQSNGNDDSQATEGASLAQEDAPKQSYASIVKVQKGSSVPTKVYVPTNTLRSGRNKTESLVVESVESDEVPEAALDGVNDPESSDAHEEVEGHSIYIRNLPLHVTVGQLEVEFKKFGPIKPEGIQVRNNKQQGYCFGFVEFLSLNSMNSAIQASPIPIGGRQAVVETKRTTTRVGSGISNTGRPRIPPGRGGLRNDTFRGRGNYGGGRGYGRHDYGSRGGDFSGRGRGYGEGYHQGRGRGGRSSGPKQNVVSN* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01272 463 Gene3D - 287 388 IPR012677 -
Lapu1g01272 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 363 IPR000504 GO:0003723
Lapu1g01272 463 MobiDBLite consensus disorder prediction 158 177 - -
Lapu1g01272 463 Gene3D - 6 138 - -
Lapu1g01272 463 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Lapu1g01272 463 SUPERFAMILY RNA-binding domain, RBD 297 379 IPR035979 GO:0003676
Lapu1g01272 463 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 435 IPR039539 -
Lapu1g01272 463 FunFam Nuclear transport factor 2 family protein 8 138 - -
Lapu1g01272 463 FunFam Ras GTPase-activating protein-binding protein 1 291 423 - -
Lapu1g01272 463 SMART rrm1_1 304 376 IPR000504 GO:0003723
Lapu1g01272 463 MobiDBLite consensus disorder prediction 382 463 - -
Lapu1g01272 463 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Lapu1g01272 463 MobiDBLite consensus disorder prediction 192 206 - -
Lapu1g01272 463 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Lapu1g01272 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Lapu1g01272 463 CDD RRM_SF 305 376 - -
Lapu1g01272 463 MobiDBLite consensus disorder prediction 190 233 - -
Lapu1g01272 463 MobiDBLite consensus disorder prediction 207 226 - -
Lapu1g01272 463 CDD NTF2 13 135 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01272 Lapu-Chr1 25514965 25528467 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01272 1 25514965 25528467 Lapu1g01272 1 25514965 25528467 ECH