Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01237 ATGGGGAGGGGAAGGGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCACTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGAGCTGTGGAAGTTAGCAAACCTGCTAAAGAGCTCGAGCAGAGCAGCTACCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACCCAAAGAAACCTTCTTGGAGAAGACTTGGGTCCACTGAATACCAAAGAACTAGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAACAAGTGAGGTCCACCAAGACGCAATTCATGCTGGATCAGTTGGCTGACCTTCAGAACAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGTCCACAGAGTTCTCACTCTCAGGGCTTCTTTCAGCCACTGGAATGCAATCCCACTTTGCAGATTGGTCCTGATTACAGGTACAATGTTGTAGCTTCAGATCAGATAACTGCAACAACTCCAGCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 750 0.452 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMQYGGPQSSHSQGFFQPLECNPTLQIGPDYRYNVVASDQITATTPAQQVSGFIPGWML* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01237 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lapu1g01237 249 Coils Coil 125 145 - -
Lapu1g01237 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu1g01237 249 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu1g01237 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu1g01237 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu1g01237 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu1g01237 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu1g01237 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Lapu1g01237 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lapu1g01237 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Lapu1g01237 249 FunFam MADS-box transcription factor 1 13 88 - -
Lapu1g01237 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu1g01237 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu1g01237 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01237 Lapu-Chr1 25232831 25240886 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu1g01237 K-box 1.3e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01237 1 25232831 25240886 Lapu1g01237 1 25232831 25240886 ECH
Lapu1g01237 1 25232831 25240886 Lapu3g00953 3 10286694 10291882 ECH
Lapu4g01265 4 29577278 29583241 Lapu1g01237 1 25232831 25240886 PCT