Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01235 ATGGGAAGGGGTAGGGTTCAGCTCAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTTTCCAAGCGGAGAACGGGACTTCTCAAGAAAGCGCACGAAATCTCTGTGCTTTGTGATGCTCAAGTCGCTTTGATTATGTTCTCTACCAAAGGCAAACCTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCTTGGAACGTTACGAGAGATATACTCATACAGGACTTACTGGAGCCAACAGTGAATCGCAGGGTAATTGGTCTTTTGAATATATCAAGCTCAACGCTAAAGTTGAAGTCTTGGAGAGGAACGTAAGGAATTTCTTGGGAAATGAGCTGGATCCCTTGAATTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTTTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCAAGGACATTACAAGAGCAAAACAGCAAGCTAACAAAGATGAAGGAGAAGGGGAAGACATTGACTGAACGTCCACAGAGCGTACCAGAAACTCTTGGCCAAAATTCAACCAACCTCAACTTATCTTCTCCACAACTATTACCACCACAAAGACTTGTTCCTTCTTTGGTGGGCCATTGCAAGGAAGAGCAACGGTGGAGGAAACGGGTGAAGCTCAAACAGTGCCAACTGGCAATTCACTCATCCCATCATGGATGCTGCATATCT 732 0.4481 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKPFEYSSERSMEDVLERYERYTHTGLTGANSESQGNWSFEYIKLNAKVEVLERNVRNFLGNELDPLNLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLTKMKEKGKTLTERPQSVPETLGQNSTNLNLSSPQLLPPQRLVPSLVGHCKEEQRWRKRVKLKQCQLAIHSSHHGCCIS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01235 244 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu1g01235 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu1g01235 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu1g01235 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu1g01235 244 MobiDBLite consensus disorder prediction 179 201 - -
Lapu1g01235 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu1g01235 244 MobiDBLite consensus disorder prediction 161 201 - -
Lapu1g01235 244 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lapu1g01235 244 Coils Coil 123 179 - -
Lapu1g01235 244 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lapu1g01235 244 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lapu1g01235 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu1g01235 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Lapu1g01235 244 MobiDBLite consensus disorder prediction 161 178 - -
Lapu1g01235 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu1g01235 244 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Lapu1g01235 244 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01235 Lapu-Chr1 25211541 25221898 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu1g01235 K-box 1.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01235 1 25211541 25221898 Lapu1g01235 1 25211541 25221898 ECH
Lapu1g01235 1 25211541 25221898 Lapu4g01264 4 29540219 29553188 PCT