Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01097 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAACCTAATCAGCCAGCAGGAATTGGCACCCAGAATCCACAGATTCCATCTCCTTTGCAGCCGCCACCTTCATCGGTGACAGCTGTTATTGGAGGTGGTGGCTATCAAGGCTCAATTAGACCGGGATCAATGGCTGATAGAGCCAGGATGGCAAAGATACACCAACCTGATGCAGCACTCAAATGTCCACGATGTGAATCTGCCAACACCAAGTTTTGCTACTACAACAACTATAGCCTCTCACAGCCTCGCCACTTTTGCAAGACTTGCCGTCGTTACTGGACCAGAGGAGGTGCACTCAGAAATGTCCCAGTTGGAGGTGGTTGTAGAAGGAACAAAAGGAACAAAGGAAGTAGATCAAAGTCTCCTATGAAACCCTCAACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCTAGTGGCTGCACCACTGATCGTGTGATGATGGCTCACTTGCCAACTCCAACCCAAACTCAATTTCCATTCTTGACCTCTTTACATCATTATAATAGTGACTGCGTTTCTGGGGGCATTGGATCTCATTTTGGGGCGACCACAACACCTTTGGGGGCTAGAAATGGCAGTGATGTTGAGTTTCAAATCGGTACTAGTTCAGCTTCATCACTAGGTAACAGTGGTGGGGCTATGTTGTCAAATGGCCTTGGTGAGCAATGGAGGTTGAACAGTCTGCAACAAGTTCAGCAGCAGCTCCCTTTTTTTAGCACTAATTTGGAGCCACAGATTGGGTTGTTTCAGTTTGGCGGTGGAGAAAATAATAACGCTGAACCGCCAAGCTATGCCAAGGATGGAGGCCGGTTTAATATTCGTTCTAAAATGGATTCTATTTCTAGTCTAAATGGGATAATGCCTCAGCTTAACACGATAAAGCTGGAAGAAAATCAAGGTTTGAGTTTGCCAAAAAATCTTTTGATGGGTAGTTCGGGAAATGATGTACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCACATAACCACTTGTTGTGA 1080 0.4574 MVFPSLPIYLDPPNWSQQQPNQPAGIGTQNPQIPSPLQPPPSSVTAVIGGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGSRSKSPMKPSTGSTSASANSSSSGCTTDRVMMAHLPTPTQTQFPFLTSLHHYNSDCVSGGIGSHFGATTTPLGARNGSDVEFQIGTSSASSLGNSGGAMLSNGLGEQWRLNSLQQVQQQLPFFSTNLEPQIGLFQFGGGENNNAEPPSYAKDGGRFNIRSKMDSISSLNGIMPQLNTIKLEENQGLSLPKNLLMGSSGNDVLWNGSGNAWSEVPCFTPSHNHLL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01097 359 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Lapu1g01097 359 MobiDBLite consensus disorder prediction 11 43 - -
Lapu1g01097 359 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Lapu1g01097 359 MobiDBLite consensus disorder prediction 11 32 - -
Lapu1g01097 359 MobiDBLite consensus disorder prediction 122 160 - -
Lapu1g01097 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 234 IPR045174 GO:0003700|GO:0006355
Lapu1g01097 359 Pfam Dof domain, zinc finger 76 132 IPR003851 GO:0003677|GO:0006355
Lapu1g01097 359 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01097 Lapu-Chr1 24078375 24080452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01097 1 134 C2C2-Dof Transcription Factor Family AT2G37590 60.000 1.22e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu1g01097 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01097 - - vun:114185583 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01097 1 24078375 24080452 Lapu1g01097 1 24078375 24080452 ECH