Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00174 ATGGGTGAACAATGTCATTCACATGCTCCATTAGATATTATTTCCAGTGGGAGTGAAGAATACTTGATGTCTCGAATGCCAAAAGAATTTAAGATTGAATGCATTAATTTGGATGCAAATGATGATATTTATCCTGTTCCACGGCCTGGAATGGTCTTTAGGTCAGAAGCTGAGGCAAGATTGTATTACACAAAATATGCCAACCAAATGGGCTTCGACATCAAGACTAGAACCTCAAAAAGGGGACGCGAAGGCAAAGTTAAATATTTGATACTTGTATGTTCTGAGAGAGCAAGAAGTGCCGCTGTTGATGCATCAAGGAAACAGTATTGTCATGCTAGGATAAATTTGACTTTACGTAAAGATGGAACCTATCTAATTAGTGCAGTTACTCTTGGTCATAATCATGAATTGGGTTCTCAACGTGTATTCCCAGTTAATATTGGCATGAAGTGTAAAAGGACATTGGATCCAGAAGTTATTGACATGGGTGTTAAGACGCCATCAGACCAAAATAATTGCAGAAATTACCCACAGAAAGAAAGACATTCGATTGGGGAGAATGGAGATGGTGATGCCCTTCAGAAGTATTTGGAGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGCGATTGACTTGGATGATTTGTTCAGAGTGAAGAATGTTTTTTGGGCTGATGGAAGGAGTAGAGCTGCATATGAATCGTTTGGTGATGTGGTGACAGTTGATACTACATGCCTTTCTAATCACTACAAAGTGCCACTTGTAACTTTCGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCATCTGAAGACTCAGAGTCATTTTCTTGGCTGTTCGAATCATTGTTGCATTGCATGTCTGGTGTACCCCCACGAGGAATCGTAACAGATCATTGCTGCAGGGCCATGCAGAAAGCAGTTGAAACTTTATACCCCTCCACTCAACATCGGTGGTGTTTGTCAAATATAATGGAAAAACTTCCCCAACTAATCGATAAGTATGCTAATTGCAAGACCTTAAGAGATCGTGTGCAGAATGCTGTGTATGACACACCAACAACAGATGAATTTGAGGGGAAATGGAAGAAGATTATGGAGGATTTTGACCTCAAAGACAACAAATGGTTGAAGGAATTGTTCCTTGAGCGGCATCACTGGGCTCCTTCCTTTGTAAGAGGTGGTTTTTGGGCTGGAATGTATATTAATCCACAAAGTGAAAGTAAGCATGCTTTTTTTGACGGATTTATAAACCAACAAACAACTATGAAGCAATTTGTTGATCAGTACAATAATGCCTTGCAATATAGGGCTGAGAAGGAGTATATAGCTGATATACATTCGTCCAGCAACAGTCAGACTTGTGTTACCAAATCTTCAATTGAGAGGCAGTTTCTATCTGCTTACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCTGATTGTAACGTTTTTGTTGCTAGTGTAGATGGTCCCATTTGTCACTACAATGTGATTGAGGATGTGATAACAGAGGATAAGCCTAAGGAATCCGTAGTTGAAGTCATATACAACAGGGAAGATTGTGATCTAAAATGCAATTGTCGCTTGTTTGAGTTCAGAGGTATACTTTGTAGGCACTCTCTTGCAGTACTGTCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGACAGATGGAGGAAAAATATTCAGAGGAAGCATGTTTATATCAAAACCAGCTATGGTGTTGGGCATTTTGAACCTCATATGCAGAGGTTTGAACTGTTATGCAGTCAATTCAATAGTATTGCTGCTGCTGCTGCTGAATTTGAGGGTACAAGTTCTTTTGTAAAGGATACCCTATGTAACTTGAAGGAGAAACTTGAAGCATGGACACCGTTACTGAGAAACTCTTCTGATGTTGATGTAGAGAAACGCAATAATATGATAGTTTGA 1983 0.3964 MGEQCHSHAPLDIISSGSEEYLMSRMPKEFKIECINLDANDDIYPVPRPGMVFRSEAEARLYYTKYANQMGFDIKTRTSKRGREGKVKYLILVCSERARSAAVDASRKQYCHARINLTLRKDGTYLISAVTLGHNHELGSQRVFPVNIGMKCKRTLDPEVIDMGVKTPSDQNNCRNYPQKERHSIGENGDGDALQKYLERMQEQDRNFFYAIDLDDLFRVKNVFWADGRSRAAYESFGDVVTVDTTCLSNHYKVPLVTFVGVNHHGQSVLFGCGLLSSEDSESFSWLFESLLHCMSGVPPRGIVTDHCCRAMQKAVETLYPSTQHRWCLSNIMEKLPQLIDKYANCKTLRDRVQNAVYDTPTTDEFEGKWKKIMEDFDLKDNKWLKELFLERHHWAPSFVRGGFWAGMYINPQSESKHAFFDGFINQQTTMKQFVDQYNNALQYRAEKEYIADIHSSSNSQTCVTKSSIERQFLSAYTHAKFLEVQHEFVGKADCNVFVASVDGPICHYNVIEDVITEDKPKESVVEVIYNREDCDLKCNCRLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIQRKHVYIKTSYGVGHFEPHMQRFELLCSQFNSIAAAAAEFEGTSSFVKDTLCNLKEKLEAWTPLLRNSSDVDVEKRNNMIV* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00174 660 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 639 IPR031052 GO:0006355
Lapu1g00174 660 Pfam MULE transposase domain 240 334 IPR018289 -
Lapu1g00174 660 Pfam SWIM zinc finger 536 559 IPR007527 GO:0008270
Lapu1g00174 660 Pfam FAR1 DNA-binding domain 62 138 IPR004330 -
Lapu1g00174 660 ProSiteProfiles Zinc finger SWIM-type profile. 524 562 IPR007527 GO:0008270
Lapu1g00174 660 SMART 26again6 537 564 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00174 Lapu-Chr1 7524876 7527990 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lapu1g00174 MULE 5.6e-25 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00174 1 7524876 7527990 Lapu1g00174 1 7524876 7527990 ECH