Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00492 ATGCAAGACCCAACAGCATTCCAAGCTTTGAAGCACCCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAAGGTGGTGCTTTGAGAAACATCCCTGTTGGGGGTGGAAGCAGAAAGAGCACAAAGCGTTCATCAACCTCAAAACGCTCTTCTGCACCGGCTTCCTCTGCGGTTTCCGAGGCTGACCCGACCCGGCTTTGCACCAACCCGGTTGAGCAAGACCATAGGGTGCTCAACATTGGTGGGACCTTCAGTTCCCTCTTGGCTTCATCTGGGCACTTTGGAACCCTCTTGGAGGGTCTGAATCCATCTGGGTCAGGTCTCAAAATGGGTGAATTTGGGGAGGGTGTGAGTTCTGACCTGGGTTTGAATTCGGATTCGGGTTCAAACCCGGGTTTGCAGCTTCAGAGTAATGGGAGTTCAGGGGGTTTTCTGGGTATGCAGAATGGGGAATCAACCTGTTGGAATGGTGGTCATGGTTGGTCTGATCTTGCAATATTCACACCTCGCCCAAGTTTTCAATAG 624 0.508 MQDPTAFQALKHPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSTSKRSSAPASSAVSEADPTRLCTNPVEQDHRVLNIGGTFSSLLASSGHFGTLLEGLNPSGSGLKMGEFGEGVSSDLGLNSDSGSNPGLQLQSNGSSGGFLGMQNGESTCWNGGHGWSDLAIFTPRPSFQ* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00492 207 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Lapu10g00492 207 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 144 IPR045174 GO:0003700|GO:0006355
Lapu10g00492 207 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Lapu10g00492 207 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Lapu10g00492 207 MobiDBLite consensus disorder prediction 152 174 - -
Lapu10g00492 207 MobiDBLite consensus disorder prediction 70 96 - -
Lapu10g00492 207 MobiDBLite consensus disorder prediction 62 103 - -
Lapu10g00492 207 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00492 Lapu-Chr10 7283846 7285719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00492 1 131 C2C2-Dof Transcription Factor Family AT1G51700 51.534 1.59e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu10g00492 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00492 - - gmx:100790822 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00492 10 7283846 7285719 Lapu10g00492 10 7283846 7285719 ECH
Lapu5g00218 5 1791752 1793273 Lapu10g00492 10 7283846 7285719 PCT