Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0967 ATGGCTTCGGAGGATGTGAAGAGCGGCGAATCTGCTGTTACGACGATTGTGAATCTGGCGGAGGAAGCGAAGCTCGCGAGAGAAGGTGTTGTCAATAAGGCTCCTAGCTATGCCGTCGCCACCATATGCAAGTCTCTAGTCGCCGGTGGAGTCGCAGGAGGAGTATCACGAACAGCAGTTGCTCCACTGGAACGCTTGAAAATTTTGCTTCAGGTCCAGAATCCTCATAACATAAAATACAATGGAACAATCCAAGGCCTTAAATATATATGGAGAACTGAAGGCTTCCGTGGACTGTTCAAAGGGAATGGTACTAATTGTGCTCGCATTGTCCCAAATTCTGCAGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGTATCTGTATCAACAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTGTTTTACGTCTTGGAGCTGGAGCATGTGCAGGAATAATTGCTATGTCTGCAACTTATCCAATGGATATGGTTCGAGGAAGGATAACTGTACAGACTGAGAATTCCCCTTATCAGTACAGAGGAATGTTCCATGCTCTGTCTACTGTGCTTAGGGAAGAAGGACCCCGTGCTCTATATAAGGGCTGGCTTCCTTCAGTAATTGGAGTTGTTCCATATGTGGGTCTCAACTTTGCTGTCTACGAGTCTTTAAAAGATTGGTTAGTTAAATCCAAACCATTTGGTCTAGTTAATGATTCTTCTGAGTTGAGCGTGACAACTCGCCTAGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTATTGCTTATCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGGGGGTTGGAACAATGCTGCTTCTGTTCTAACTGGTGATGGAAGAGGCAAAGTCCCACTTGAATACACTGGAATGATTGATGCATTTAGGAAAACTGTTCGGCATGAAGGATTTGGTGCATTGTACAAGGGTCTGGTTCCCAATTCTGTTAAGGTGGTCCCATCCATAGCACTTGCATTTGTAACATACGAGGTGGTGAAGGACATTTTAGGAGTGGAGATCAGAATATCAGACTAA 1074 0.4488 MASEDVKSGESAVTTIVNLAEEAKLAREGVVNKAPSYAVATICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTENSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLVKSKPFGLVNDSSELSVTTRLACGAAAGTVGQTIAYPLDVIRRRMQMGGWNNAASVLTGDGRGKVPLEYTGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSIALAFVTYEVVKDILGVEIRISD* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0967 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 247 348 IPR018108 -
Lan9g0967 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 40 127 IPR018108 -
Lan9g0967 357 PANTHER SOLUTE CARRIER FAMILY 25 1 352 - -
Lan9g0967 357 Gene3D Mitochondrial carrier domain 38 351 IPR023395 -
Lan9g0967 357 PANTHER BNAA09G39370D PROTEIN 1 352 - -
Lan9g0967 357 Pfam Mitochondrial carrier protein 143 235 IPR018108 -
Lan9g0967 357 Pfam Mitochondrial carrier protein 42 126 IPR018108 -
Lan9g0967 357 Pfam Mitochondrial carrier protein 246 349 IPR018108 -
Lan9g0967 357 PRINTS Mitochondrial carrier protein signature 45 58 IPR002067 GO:0055085
Lan9g0967 357 PRINTS Mitochondrial carrier protein signature 58 72 IPR002067 GO:0055085
Lan9g0967 357 PRINTS Mitochondrial carrier protein signature 102 122 IPR002067 GO:0055085
Lan9g0967 357 PRINTS Mitochondrial carrier protein signature 158 176 IPR002067 GO:0055085
Lan9g0967 357 PRINTS Mitochondrial carrier protein signature 204 222 IPR002067 GO:0055085
Lan9g0967 357 PRINTS Mitochondrial carrier protein signature 256 278 IPR002067 GO:0055085
Lan9g0967 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 143 231 IPR018108 -
Lan9g0967 357 SUPERFAMILY Mitochondrial carrier 42 344 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0967 Lan-Chr9 16229776 16234526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0967 46 352 EF-hand Containing Proteins AT5G51050 37.987 1.14e-64 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0682 11 5734913 5743225 Lan9g0967 9 16229776 16234526 LSH
Lan9g0967 9 16229776 16234526 Lan2g0748 2 15864575 15869859 LSH
Lan2g0355 2 3340656 3344785 Lan9g0967 9 16229776 16234526 PCT
Lan9g0967 9 16229776 16234526 Lan2g0355 2 3340656 3344785 PCT