Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0848 ATGCATGAGATTAGGAAGGACCAGAACATAAGGCTTTTTGGTAGAATTATTTCTCTGCCAAGCAACAGCACCAATGATTCTTCTTCTGAACATGCTTCTTCTCTTCTACCTCAAGATCATAGTCCTCCTTCATCTTCATCCTCTCCACGTGAAGCGATCTCTGAAACAGAACATGAAGCAGAAACTTATAAGGAACCATCAACTAAAGAACTTGCCACAGATCAAGATGATGAAGCCACACTTCAAACCAAAGAGGATTTAAAATCTCCCACATCTTCAGGTACTTATGAGAACCCAAAGACTCCCTCTGCAGAAAAAGAGACTTCTTTAGCGAAATCTTCTAAAAATGGAGAACAAAGCGAGACAAGTGTGTCACAAGACAAAACTCTAAAGAAACCAGACAAGATACTTCCATGCCCGCGATGCAATAGCATGGACACTAAATTTTGTTACTACAACAATTACAATGTCAACCAGCCCCGTTACTTCTGTAAGAAGTGTCAGAGATACTGGACTTCTGGAGGAACCATGAGAAATGTTCCCGTAGGCGCAGGTCGCCGCAAGAACAAAAGCTATCTATCTTCTGCCGAACATTATCACCAAATAATAGTTCCTGAGGCCCTTCAAGCATCCAAACTCGGCGGATTACACAATGGTACGTTAGGAAATGGAGCAGCTGTCTTGACCTTTGGATCAGATTCTCCTCTTTGTGATTCCATGACTTCTGTCTTGAGCCTTGCTGAGAAAGCACAAAATGGTATAGTCCTAAATGGATTTCATGCACCTAACCAGAATGTTTTCGTTCGCTATGATAAAAAAGAAATTAATAATAATAACAATGGGGGTGAAAACTTAGTAGCAGCTTCTGTTTTGGATTTAACTTCATCTGAGAACAAAGGGCATGGTGGCTCACATGAACCAATGGATAAGAGTCATCAAGGTTTCCCTCAATTTCCATGCTTCCAAGGTTCTTCTTCACCTTGGCCTTATCCATGGAACCCTGCATGGCCTCCTCCTCCATTTTCCCAACCATGTTATCCTATGTCATTCTATCCTACACATGCATATTGGGGTGTTAATGTTATGCCACCACCAACTTGGAGTGTACACCCTATATCTCCTCAATCCCACTCTATTACTAGTTCTAGCCCGAATTCACCGACTTTGGGAAAACACTCAAGGGATGGAAACATCATCTCTCAAACTAATTCAGTGAAAGAAAAGCCTGGCACAGAAAGTATTAGCAACAACAACTCAGAAAGTAGTGTCTTGATTCCCAAGACACTAAGAATTGATGATCCTGGTGAAGCTGCTAAGAGTTCTTTATGGTCAACACTAGGGGCCAAGAATGAAGGAGGTCTTTTCAAGGCATTCCCATCATCCAAGGGTGGTAACAAGAATCATGTGGTTGAAGCATCACCAGTGTTGCATGCAAACCCTGCAGCATTATCAAGGTCTCTTATCTTCCATGAGAGGACCTAG 1482 0.4204 MHEIRKDQNIRLFGRIISLPSNSTNDSSSEHASSLLPQDHSPPSSSSSPREAISETEHEAETYKEPSTKELATDQDDEATLQTKEDLKSPTSSGTYENPKTPSAEKETSLAKSSKNGEQSETSVSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKKCQRYWTSGGTMRNVPVGAGRRKNKSYLSSAEHYHQIIVPEALQASKLGGLHNGTLGNGAAVLTFGSDSPLCDSMTSVLSLAEKAQNGIVLNGFHAPNQNVFVRYDKKEINNNNNGGENLVAASVLDLTSSENKGHGGSHEPMDKSHQGFPQFPCFQGSSSPWPYPWNPAWPPPPFSQPCYPMSFYPTHAYWGVNVMPPPTWSVHPISPQSHSITSSSPNSPTLGKHSRDGNIISQTNSVKEKPGTESISNNNSESSVLIPKTLRIDDPGEAAKSSLWSTLGAKNEGGLFKAFPSSKGGNKNHVVEASPVLHANPAALSRSLIFHERT* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0848 493 MobiDBLite consensus disorder prediction 52 84 - -
Lan9g0848 493 MobiDBLite consensus disorder prediction 371 421 - -
Lan9g0848 493 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 493 - -
Lan9g0848 493 MobiDBLite consensus disorder prediction 85 124 - -
Lan9g0848 493 Pfam Dof domain, zinc finger 134 191 IPR003851 GO:0003677|GO:0006355
Lan9g0848 493 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Lan9g0848 493 MobiDBLite consensus disorder prediction 19 51 - -
Lan9g0848 493 MobiDBLite consensus disorder prediction 19 136 - -
Lan9g0848 493 PANTHER CYCLIC DOF FACTOR 2 5 493 IPR045174 GO:0003700|GO:0006355
Lan9g0848 493 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0848 Lan-Chr9 14283037 14286665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0848 7 491 C2C2-Dof Transcription Factor Family AT5G39660 40.705 1.47e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan9g0848 zf-Dof 8.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0848 - - gmx:100813315 491.5