Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0211 ATGTGTGGACCAAAGGAACCCCTAAATAAAACCCACCACACAACAATGCCACCTCTATTTGCATCCATTTTCTCCCCACAAATCCTTCTATCTCTTCTTAGCTCTCTCTCAAACCACCAAGTTCTCTCTATTCTCTTCAAATCCACGCTAAAAACGCGTTACAAAGAGAGAAGAAGGGTCATAAATATATATATCTCAAGAAATAATAACTTACACCACAACAAACAACAAAGCAACACAAATATCATTTTCTTCTTTCATTTCATTTGTGTGTTCATTATTAACATGGCCGTTGAGGCTCACCATCTCAACCTCTTATCTCCTCAACTCATAAACATCAATAGAGAAATGATGAACCCTATTGATACAAATATCAATCTTTACAACACAACCCAAATTAATTACCCTTCAGTACTTCCATTATCCGGCACCACAACAACCACCGAGAATGTTTTCCGGCCACCGTACAATACCTTAAAATCTGATAGCAGCCTCACCTATAATGTTCCTTTATCAAGAAAACGTTCAAGGGAAAACTCTAATATTATCAACTATCCTTACTCTTCTTACACCACAACAACCCAAAATCACAAAAAGAGTAATTGTAGCTCTTTCTCATTCCTTGGTGAAGATCTTTCTCTCCATTTCCAGCAACAACAACTTGATATCAATAACATCATTGCTGAACGATTGGAGAAAGTAAGGATTGAGATAGAGGAAAAAAGAAAGGGGCAATTAAGGAAATTTATGGAAGCAATTGAAGTTGGTGTAATGAAAAGACTAAAAACAAAGGAAGATGAGATAGAGAAAATTGGAAAACTCAATTGGGCATTAGAAGAAAAAATCAAGTCTCTTTGCATAGAGAATCAAATATGGCGTAATTTAGCGCAAACCAATGAAGCCACAGCCAATGCTCTGCGTAACGAATTGGAACAAGTCCTCATCCACCGTGCTGGCGGAGATGAAAATGAAACCACCGTGTGCCCTGGCGGCGCAGCAGCGGCGCTTATGGACGACGCAAGTTCATGTTGTGGTAGCACTGACGGTGATAACAAGAAAAAAGATAGTGAAGGAGTGTGGCGCACGATAATGGGATGCGCCGGGATGAAGGATAAGGAAGGTAGTGGTAAGGGTATAATTGGAAAAAATGATGATAATATGAGATTGTGCAAGAATTGTGGGAAAGAAGAATCGTGTGTGCTTATCTTGCCATGTAGGCATTTGTGTTTGTGTAATATTTGTGGTTCTAGTCTTCATAATTGTCCCATTTGTAAATCCTTTAAGAATGCTAGTGTTCATATTAACATGTCCTAG 1314 0.3866 MCGPKEPLNKTHHTTMPPLFASIFSPQILLSLLSSLSNHQVLSILFKSTLKTRYKERRRVINIYISRNNNLHHNKQQSNTNIIFFFHFICVFIINMAVEAHHLNLLSPQLININREMMNPIDTNINLYNTTQINYPSVLPLSGTTTTTENVFRPPYNTLKSDSSLTYNVPLSRKRSRENSNIINYPYSSYTTTTQNHKKSNCSSFSFLGEDLSLHFQQQQLDINNIIAERLEKVRIEIEEKRKGQLRKFMEAIEVGVMKRLKTKEDEIEKIGKLNWALEEKIKSLCIENQIWRNLAQTNEATANALRNELEQVLIHRAGGDENETTVCPGGAAAALMDDASSCCGSTDGDNKKKDSEGVWRTIMGCAGMKDKEGSGKGIIGKNDDNMRLCKNCGKEESCVLILPCRHLCLCNICGSSLHNCPICKSFKNASVHINMS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0211 437 PIRSF SBP1_RNase_bind 95 437 IPR017066 -
Lan9g0211 437 PIRSF SBP1_RNase_bind 31 84 IPR017066 -
Lan9g0211 437 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 96 436 IPR017066 -
Lan9g0211 437 Coils Coil 228 248 - -
Lan9g0211 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 437 IPR013083 -
Lan9g0211 437 ProSiteProfiles Zinc finger RING-type profile. 390 425 IPR001841 -
Lan9g0211 437 Pfam Zinc finger, C3HC4 type (RING finger) 388 426 - -
Lan9g0211 437 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 96 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0211 Lan-Chr9 2606345 2608390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0211 369 426 Miscellaneous Gene Families AT4G39050 37.931 8.01e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0089 19 710484 711815 Lan9g0211 9 2606345 2608390 LSH
Lan9g0211 9 2606345 2608390 Lan7g0681 7 5693953 5695371 PCT
Lan9g0211 9 2606345 2608390 Lan13g0630 13 5280208 5281689 PCT
Lan7g0681 7 5693953 5695371 Lan9g0211 9 2606345 2608390 PCT
Lan13g0630 13 5280208 5281689 Lan9g0211 9 2606345 2608390 PCT