Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1937 ATGGCGGAACCTTCTTCTTCTTCTCCTGTTAGGGTTTGCAGTCCTCTTATTCAACACCCAACCGCAGGGATCATCAAGAAGCTTCGATTGCTCAATTTCATGTGTCATTCCCACCTCGAGACCCATTTCGACAACTTCCTCAATTTCATTACTGGTCAAAATGGAAGTGGTAAGAGTGCAATTCTAACTGCCTTGTGCATTGCATTTGGTTCTCGAGCTAAAGGGACTCAAAGAGCATCCACTCTCAAAGACTTCATTAAAAACGGTGCCAGCGATGCTCTCGTCCATGTTGAAATTCAAAATCAAGGAGAGGATGCTTTTAAACCTGAAAAATATGGTCATCTTATAATCGTACAACGTAAGATATCTCAATCTTCAAGCTCTATCACATTAAAAGACCACCAAGGAAAAACAGTCAGCCACGGGAGAGCAGATCTCCAAGAAATCATTGAACATTTTAATATTGATGTCGAGAATCCATGTGTGATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAGCAAAGATAAATTTAAGTTTTTTTACAAGGCCACACTTCTTCAGCAAGTCAGTGATCTACTGGAAAGCATTTCTAGCGAAATAAATATTGCAGCTGGCATAGTTGAAGAATTAGAGGCTGCAATAAGGCCCATAGAGAAGGAGCTCAGAGAGATTGAAGCTAAAATTAGAGCTATGGAACATGTAGAACAAATATCTATGCAGGTTCAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTTTCATGTGGACAGGCAACTTAAAGTACAGAACGAAAAAGTTGAAAAGCTGAAGAGCCGGATACCTTCCTGCCAAGCTAAGATTGACCAACAACTGCGCCGGATTGAAAGATTGGTAGAAAACTGTTCCATGAAAAAAGATGAAATTGCAAATATGTTGGAAAAGACATCACAAGTTAAGCAATTGAAGGAAAATTTAAGCCGCTCTGTGTCCTCGGCTACAAAAGAAGCATTAGAACTTGAGCTGGACTGCAAATCCAAAACTAGCAACGTACGGAAAATGGAGCAGCAACTTAGAACGCTTAAACAACAAATGCAGGATATCCGTGAGCAGCATATGAAAAATACTCAGGCTGAAGAGGCTGACATGGAGGAGAAACTGATAGTGCTCCAAGAAGAAGTTCGCTCTGCTGAGTTAGATCTGAAAAGGCTGAAGGAAGAGGAGATTATGTTGAGTAACAGCGTACAAAACATAAAAGATGAAATCAGAAAGATTGCTGATGAGATCCAAGATCATGAAAAAAGGCACCGTGGTCTTTCCTCTAGTATCCGTGATCTTCATCAACACCAAAGTAACAAGATTGCAGCTTTTGGAGGACATAAAGTGATGAACCTCTTACGCATAATTGAGAGAGATCATCGAAGGTTTAAGATGCCACCTATTGGTCCAATTGGCGCCCATCTGAAGTTGCTTAATGGTGATAAATGGGCGCTTGCCGTTGAACATGCAATTGGGCGAATGCTCAATTCTTTTATAGTGGCTGATCATAAGGATCTTCAACTTCTGAAACAATGTGCGAAGGAAGCACACTATGATAACCTTCAAATTATTATTTATGACTTTTCCAGACCAAGGTTGATGATACCAGCGCACATGCTTCCTGATACAAACCATCCATCAATTTTTTCCATCTTACAATCAGATAATCATATTGTGATTAACGTCTTAGTGGATTTGGGAAATGTTGAAAGACAAGTGCTTGTTAATGATTATAATATTGGAAAAGTGATTGCCTTCGAACAAAGGATCCATAATTTGAAGGAGGTATACATGGCTAATGGATCTAAATGTTTTTCACGAGGTTCAGTGCAGACTCATATTCCCCCAAGTAAATGGATAAGAACTGGACGTCTACGTAGTTCTTTTGAAGATCAGATTAAGGATCTTCAAATTGAAGCATCCGATGAACAAAAGGCGGCTAACGATGGCAAAAGTAATAAAAGAGAGGCAGAGATCAAGCTTGAGGAGCTTGAAAGTAAACTGAAATCTATAAAGAGGGTTTGTTTTAATGCCGAAAAAAGTTATTCTTCTAAGAAACTAGCTCTGGATGAGGCAATGCATCAACAGGCTGTGGAAAAGAGCTCAACGCCTTCATCATCTGTTGATGAGCTTATTGAAGAAATTTCAGAAGTCCAGAAAAAAATAAAAGATGACAAAGACTTGTTGGAAGACCTTCAGCATAGGAGACATGAAGCAGATGGAAAAGCAGAAGATCTCAAAATAAAATTTAGCAAGCTTTGTGAGTCAGCGAACGGGGAAATTGCTGCCCTTGAGAAAGCTGAGAAAGAACTTGTGGAGATTGAAAGAGAAATGGATTTGGCAAAAAAGGATAAGGATCATTATGATGGTGTCATGAAAAATAAGGTCCTGCCTGATATTAAAGAGGCAGAAGAATGCTATCTGAATCATATGAAGACACGTGAGGAGAACATTAAAAAGGCTTCCGTAATTTGCTGTGAGAGGGAACTTGATTCATTAGGAGGTTCTGACGGGAGCACCCCAGAGCAAATCAGTGCCCAGTTAGAGAAACTGAGTCAGAGACTTAGGCAGGAGAGCCAAAGGTACTCTGAATCAATTGATGATCTTAGGATGCTGTATGAGAAAAAATTACGCAAGATTACAAGAAGGCAGCAAGTTTACCAAGCGCTTAGGCAGAAATTGGAGGCTTGCAAGAGAGCATTGAAGTTAAGAAGGGGCAAGTTTCAGAGAAATGCAAATTACTTGAAGGGCCAGCTTTCTTGGAAATTTAATGCCCATCTGCGAAGGAAGGGGATCAGTGGACTTATCAAAGTTAGTTATGAGGAGAAAACCTTATCGATTGAGGTACAGATGCCGCAAGACGCATCAAACCGAGCTGTTCATGACACTCGGGGGCTTTCAGGTGGAGAGCGTTCTTTTTCGACATTGTGCTTTGCATTGGCTCTTCATGAAATGACAGAAGCCCCTTTCAGAGCAATGGATGAATTTGATGTATTTATGGATCCAGTAAGCAGAAAAATAAGCTTGGACAGTGTGGTGGATTTTGCTACAGCACATGGATCCCAATGGATATTCATCACACCTCATGATATTAGCTTGGTCAAGGCGGGGCCCAGGGTTAAGAAGTTGATAATGGCAGCCCCACGTTCTTAA 3186 0.4043 MAEPSSSSPVRVCSPLIQHPTAGIIKKLRLLNFMCHSHLETHFDNFLNFITGQNGSGKSAILTALCIAFGSRAKGTQRASTLKDFIKNGASDALVHVEIQNQGEDAFKPEKYGHLIIVQRKISQSSSSITLKDHQGKTVSHGRADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNSKDKFKFFYKATLLQQVSDLLESISSEINIAAGIVEELEAAIRPIEKELREIEAKIRAMEHVEQISMQVQQLKKKLAWSWVFHVDRQLKVQNEKVEKLKSRIPSCQAKIDQQLRRIERLVENCSMKKDEIANMLEKTSQVKQLKENLSRSVSSATKEALELELDCKSKTSNVRKMEQQLRTLKQQMQDIREQHMKNTQAEEADMEEKLIVLQEEVRSAELDLKRLKEEEIMLSNSVQNIKDEIRKIADEIQDHEKRHRGLSSSIRDLHQHQSNKIAAFGGHKVMNLLRIIERDHRRFKMPPIGPIGAHLKLLNGDKWALAVEHAIGRMLNSFIVADHKDLQLLKQCAKEAHYDNLQIIIYDFSRPRLMIPAHMLPDTNHPSIFSILQSDNHIVINVLVDLGNVERQVLVNDYNIGKVIAFEQRIHNLKEVYMANGSKCFSRGSVQTHIPPSKWIRTGRLRSSFEDQIKDLQIEASDEQKAANDGKSNKREAEIKLEELESKLKSIKRVCFNAEKSYSSKKLALDEAMHQQAVEKSSTPSSSVDELIEEISEVQKKIKDDKDLLEDLQHRRHEADGKAEDLKIKFSKLCESANGEIAALEKAEKELVEIEREMDLAKKDKDHYDGVMKNKVLPDIKEAEECYLNHMKTREENIKKASVICCERELDSLGGSDGSTPEQISAQLEKLSQRLRQESQRYSESIDDLRMLYEKKLRKITRRQQVYQALRQKLEACKRALKLRRGKFQRNANYLKGQLSWKFNAHLRRKGISGLIKVSYEEKTLSIEVQMPQDASNRAVHDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDPVSRKISLDSVVDFATAHGSQWIFITPHDISLVKAGPRVKKLIMAAPRS* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1937 1061 Coils Coil 637 692 - -
Lan8g1937 1061 Gene3D - 24 230 IPR027417 -
Lan8g1937 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 16 1061 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lan8g1937 1061 Coils Coil 286 313 - -
Lan8g1937 1061 Coils Coil 768 795 - -
Lan8g1937 1061 Coils Coil 719 760 - -
Lan8g1937 1061 Coils Coil 371 433 - -
Lan8g1937 1061 SUPERFAMILY Smc hinge domain 435 599 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lan8g1937 1061 CDD ABC_SMC6_euk 25 179 - -
Lan8g1937 1061 Coils Coil 856 879 - -
Lan8g1937 1061 Pfam RecF/RecN/SMC N terminal domain 25 1040 IPR003395 -
Lan8g1937 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 16 1061 - -
Lan8g1937 1061 Coils Coil 212 232 - -
Lan8g1937 1061 Gene3D - 740 1053 IPR027417 -
Lan8g1937 1061 CDD ABC_SMC6_euk 965 1061 - -
Lan8g1937 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 1051 IPR027417 -
Lan8g1937 1061 Coils Coil 321 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1937 Lan-Chr8 25389414 25416821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1937 18 1061 Structural Maintenance of Chromosomes family AT5G61460 57.184 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1937 K22804 - gmx:100816916 1449.11