Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1871 ATGGATTGTACAGCGACGAGAAAAACTCAAAAGGCTGGCCGAGAGAAGTTGAGAAGGGATCGAATCAATGAACAATTTGGAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGATAAAGCAACTATTCTAGGTGATACAATTCAGTTGCTGAATGACCTTACTTCTCAAGTTGGAAAGCTCAAAGAGGAATATACGGCACTAAATGAAGAATCTCGTGAGTTGGCTCAGGAGAAAAATGATCTCAGAGAAGAGAAGGCTTCTCTTAAATTGGATATTGAGAACTTAAATAATCAGTATCAGCAGAGACTCAGGACTATGTTTCCGTGGTCTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCGTATCCAATGCCAGTACCAGTTCCTCCTGGCCCGATTCCCATGCAGCCTTACCCTTACTTTGCTAATCAAAATCTCGCAGTCATCCCTAACCCATGTTCAACATATGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAGCAATCCACCCAGTATGTATCGCCACCAGTTCATCCAGGTAGTCGGTCTCACGTGTCAAGCAAACAAGACTCCAAACACAAGTCATCCAGGGAGAGCAGGGCTGAAAGAAGTCAGGCTTCTAATGAAGTTACTACGGACCTTGAGTTGAAGACTCCTGGGTCTTCTGCAGAACAGGATTTATCATGTGGACAAAGAAAATCCAGCAAGTCGTCAAGGAAGGGAAACAGTTGCACAGAAGGGAGTTCTTTAGGTAGGCCTTCTTCGTCCCGTAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAGAATGGCTAATGAATGA 849 0.4393 MDCTATRKTQKAGREKLRRDRINEQFGELGNILDPDRPKNDKATILGDTIQLLNDLTSQVGKLKEEYTALNEESRELAQEKNDLREEKASLKLDIENLNNQYQQRLRTMFPWSAMDHSVMMAPPSYPYPMPVPVPPGPIPMQPYPYFANQNLAVIPNPCSTYVPYLAPNTLVEQQSTQYVSPPVHPGSRSHVSSKQDSKHKSSRESRAERSQASNEVTTDLELKTPGSSAEQDLSCGQRKSSKSSRKGNSCTEGSSLGRPSSSRSVQDSSSSSVVGSRMANE* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1871 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Lan8g1871 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Lan8g1871 282 Gene3D - 5 89 IPR036638 GO:0046983
Lan8g1871 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 IPR044579 GO:0003700|GO:0055072
Lan8g1871 282 Coils Coil 53 108 - -
Lan8g1871 282 SMART finulus 12 62 IPR011598 GO:0046983
Lan8g1871 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 - -
Lan8g1871 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 75 IPR036638 GO:0046983
Lan8g1871 282 MobiDBLite consensus disorder prediction 192 211 - -
Lan8g1871 282 MobiDBLite consensus disorder prediction 176 282 - -
Lan8g1871 282 CDD bHLH_AtILR3_like 11 85 - -
Lan8g1871 282 MobiDBLite consensus disorder prediction 176 191 - -
Lan8g1871 282 MobiDBLite consensus disorder prediction 212 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1871 Lan-Chr8 24977437 24979181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1871 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 66.109 3.66e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g1871 HLH 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1871 - - cam:101491902 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0070 7 351678 354156 Lan8g1871 8 24977437 24979181 LSH
Lan8g1871 8 24977437 24979181 Lan13g0130 13 755845 766352 LSH